Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFIOZ_RS20845 Genome accession   NZ_CP170448
Coordinates   4576079..4577587 (+) Length   502 a.a.
NCBI ID   WP_386080980.1    Uniprot ID   -
Organism   Vreelandella sp. F11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4571079..4582587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOZ_RS20830 (ACFIOZ_20830) - 4571620..4572603 (+) 984 WP_386080975.1 helix-turn-helix transcriptional regulator -
  ACFIOZ_RS20835 (ACFIOZ_20835) - 4572762..4574882 (+) 2121 WP_386080976.1 TonB-dependent siderophore receptor -
  ACFIOZ_RS20840 (ACFIOZ_20840) - 4575067..4575951 (+) 885 WP_386080978.1 ABC transporter substrate-binding protein -
  ACFIOZ_RS20845 (ACFIOZ_20845) comM 4576079..4577587 (+) 1509 WP_386080980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFIOZ_RS20850 (ACFIOZ_20850) - 4577584..4578165 (-) 582 WP_386080982.1 NADPH-dependent FMN reductase -
  ACFIOZ_RS20855 (ACFIOZ_20855) - 4578385..4579695 (+) 1311 WP_386080984.1 esterase-like activity of phytase family protein -
  ACFIOZ_RS20860 (ACFIOZ_20860) - 4579802..4580785 (-) 984 WP_386080985.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53686.91 Da        Isoelectric Point: 7.3369

>NTDB_id=1057501 ACFIOZ_RS20845 WP_386080980.1 4576079..4577587(+) (comM) [Vreelandella sp. F11]
MTLAIVATRAGVGLDAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALVNAGFDFPNTRRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVEALEGMECAGELALDGKLRAVPGILPFALATRRAKKALIIPRDCADEAALAGDLPVLPADT
LWQVVAHLLDQEKIPPHKLSASVKTTAPVDDLADVRGQQQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLS
EEDALEVAAVRSVCGLPLEADWGKRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRHVLEVLRQPLE
TGEIHLARASHERRYPAQFQLVAAMNPCPCGHLGDPRQRCQCTASQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAQT
QGESSEAVRERVMAARERQMARGALNSQLSGKALEAACALNDEERAWLAGVLEKLKLSARAYHRVLRVALTLADLQGEPK
PTQPHLIEAIGYRQLDRMLKGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1057501 ACFIOZ_RS20845 WP_386080980.1 4576079..4577587(+) (comM) [Vreelandella sp. F11]
ATGACGCTAGCCATTGTAGCCACGCGAGCGGGCGTAGGTTTAGATGCACCGGCGGTGCATGTTGAGGTGCATCTGGCTAA
CGGCTTGCCGGGCCTAACGCTAGTGGGTTTGCCGGAAACGGCGGTAAAAGAGAGCCGCGAACGGGTGCGCAGTGCGCTAG
TCAATGCAGGCTTTGATTTTCCCAATACCCGCCGTATTACCTTAAACCTTGCCCCCGCTGATCTTCCCAAAGAGGGAGGC
CGTTTTGATCTGCCCATTGCACTGGGCATCCTAGCCGCCTCCGGGCAAATTCCGGTGGAAGCGTTAGAAGGCATGGAGTG
CGCTGGTGAGCTGGCCCTGGACGGCAAACTGCGCGCGGTGCCGGGCATACTGCCCTTTGCCCTTGCCACACGACGAGCAA
AGAAAGCGCTGATTATTCCCCGCGACTGCGCCGATGAAGCAGCACTGGCGGGGGATCTGCCGGTACTACCCGCCGATACG
CTCTGGCAAGTCGTCGCTCACCTACTCGACCAAGAGAAGATCCCGCCGCACAAGCTCAGTGCCTCGGTGAAAACCACTGC
CCCAGTAGATGATCTCGCCGATGTGCGCGGCCAGCAGCAGGCCCGCCGGGCGCTGGAAGTCGCTGCGGCCGGAGGCCACA
ATCTGCTATTCGCAGGCCCTCCCGGCACCGGCAAAACCATGCTGGCCAGTCGGCTGCCCGGTATTTTGCCGCCGCTTTCC
GAAGAAGATGCGCTGGAAGTGGCCGCCGTGCGTTCGGTCTGCGGGCTACCGCTGGAAGCCGACTGGGGTAAGCGGCCCTT
CCGCCAACCCCATCACAGCGCCAGCGCCGCCGCTTTGGTGGGTGGCGGCTCAAAACCCAAACCCGGCGAAATTTCACTCG
CCCACCACGGCGTGCTGTTTTTGGATGAACTACCGGAGTTTTCCCGCCATGTGCTAGAGGTTTTGCGCCAACCGCTAGAA
ACGGGAGAGATCCATTTAGCCCGCGCCAGCCATGAGCGCCGTTACCCAGCTCAATTCCAGCTCGTCGCTGCCATGAACCC
TTGCCCCTGCGGCCACTTGGGTGACCCGCGCCAACGCTGCCAGTGCACTGCCAGCCAAATCCAGCGTTACCAAGCGCGGC
TTTCCGGACCACTGCTAGACCGGATCGATCTGCAAGTGGAGGTTCCCGCGCTGCCGCCAGAGCAGCTCACCGCACAAACT
CAAGGCGAGTCGTCCGAAGCCGTGCGTGAACGGGTAATGGCCGCTCGGGAGCGCCAAATGGCCCGCGGGGCGCTCAACAG
CCAACTTAGCGGCAAAGCCCTGGAAGCCGCCTGCGCGCTTAACGATGAAGAGCGCGCCTGGCTCGCGGGCGTACTCGAAA
AGCTCAAGCTCTCCGCCCGCGCCTATCACCGCGTACTGCGCGTAGCCCTGACCCTTGCCGACCTTCAGGGCGAACCCAAG
CCCACCCAACCGCACCTGATTGAAGCAATTGGCTACCGGCAGTTGGATCGGATGTTGAAAGGTGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.49

100

0.564
  comM Glaesserella parasuis strain SC1401

55.227

100

0.558
  comM Vibrio cholerae strain A1552

55.07

100

0.552
  comM Vibrio campbellii strain DS40M4

54.473

100

0.546
  comM Legionella pneumophila str. Paris

52.096

99.801

0.52
  comM Legionella pneumophila strain ERS1305867

52.096

99.801

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.082

99.004

0.466

Multiple sequence alignment