Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1Q81_RS00190 Genome accession   NZ_CP170385
Coordinates   35500..36003 (-) Length   167 a.a.
NCBI ID   WP_386697654.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 30500..41003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS00155 - 30569..30868 (+) 300 WP_386697645.1 YkgJ family cysteine cluster protein -
  O1Q81_RS00160 (O1Q81_00031) - 31003..31410 (+) 408 WP_386687838.1 DUF2251 domain-containing protein -
  O1Q81_RS00165 (O1Q81_00032) gorA 31538..32908 (+) 1371 WP_386697647.1 glutathione-disulfide reductase -
  O1Q81_RS00170 (O1Q81_00033) - 32934..33272 (+) 339 WP_386697649.1 carboxymuconolactone decarboxylase family protein -
  O1Q81_RS00175 (O1Q81_00034) - 33350..34072 (-) 723 WP_386687844.1 MgtC/SapB family protein -
  O1Q81_RS00180 (O1Q81_00035) aroE 34072..34881 (-) 810 WP_386697650.1 shikimate dehydrogenase -
  O1Q81_RS00185 (O1Q81_00036) - 34883..35428 (-) 546 WP_386697652.1 Sua5/YciO/YrdC/YwlC family protein -
  O1Q81_RS00190 (O1Q81_00037) ssb 35500..36003 (-) 504 WP_386697654.1 single-stranded DNA-binding protein Machinery gene
  O1Q81_RS00195 (O1Q81_00038) uvrA 36154..38985 (+) 2832 WP_386697656.1 excinuclease ABC subunit UvrA -
  O1Q81_RS00200 (O1Q81_00039) - 39096..40148 (+) 1053 WP_386694987.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18951.69 Da        Isoelectric Point: 5.3111

>NTDB_id=1056482 O1Q81_RS00190 WP_386697654.1 35500..36003(-) (ssb) [Lonepinella sp. MS14436]
MAGVNKVIIVGRLGNDPEVRTMPNGEAVANISVATSESWTDKNTGERREQTEWHRIVFYRRQAEVVGEYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLDSRNANQNGYNQDNSNFAGNSSFGGQQQSSGYSRQAPQTQKAKPVNEPPMDN
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1056482 O1Q81_RS00190 WP_386697654.1 35500..36003(-) (ssb) [Lonepinella sp. MS14436]
ATGGCAGGAGTTAATAAAGTCATTATTGTAGGTCGTTTAGGTAACGATCCAGAAGTGCGTACCATGCCGAACGGTGAAGC
CGTAGCAAATATTAGTGTTGCGACTAGTGAAAGTTGGACGGATAAAAATACGGGTGAACGCCGTGAACAAACCGAATGGC
ATCGTATTGTATTTTATCGCCGTCAAGCAGAAGTCGTTGGTGAATATTTACGTAAAGGCTCACAGGTTTATGTGGAAGGA
CGTTTACGTACTAGAAAATGGCAAGATCAAAACGGGCAAGATCGCTATACCACAGAAATCCAAGGGGATGTCATGCAGAT
GTTGGATAGCCGTAATGCTAATCAAAATGGATATAATCAAGATAATAGCAATTTTGCAGGTAATAGTAGTTTTGGTGGTC
AACAACAATCAAGTGGTTACTCGCGTCAAGCACCACAAACTCAAAAAGCGAAACCAGTGAATGAACCACCAATGGATAAT
TTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.362

100

0.725
  ssb Vibrio cholerae strain A1552

58.286

100

0.611
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.491
  ssb Neisseria meningitidis MC58

46.857

100

0.491
  ssb Latilactobacillus sakei subsp. sakei 23K

36.364

100

0.383
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.207

100

0.377

Multiple sequence alignment