Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | AB5G97_RS04185 | Genome accession | NZ_CP170371 |
| Coordinates | 845418..845738 (-) | Length | 106 a.a. |
| NCBI ID | WP_376869422.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain Aer12 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 840418..850738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5G97_RS04165 (AB5G97_04165) | - | 840814..841512 (-) | 699 | WP_005349201.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| AB5G97_RS04170 (AB5G97_04170) | - | 841753..842724 (+) | 972 | WP_376869420.1 | response regulator | - |
| AB5G97_RS04175 (AB5G97_04175) | - | 842799..844196 (-) | 1398 | WP_021231963.1 | peptide MFS transporter | - |
| AB5G97_RS04180 (AB5G97_04180) | galU | 844410..845321 (-) | 912 | WP_005339121.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AB5G97_RS04185 (AB5G97_04185) | comE1/comEA | 845418..845738 (-) | 321 | WP_376869422.1 | ComEA family DNA-binding protein | Machinery gene |
| AB5G97_RS04190 (AB5G97_04190) | pta | 846116..848296 (-) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| AB5G97_RS04195 (AB5G97_04195) | - | 848351..849553 (-) | 1203 | WP_040097310.1 | acetate kinase | - |
| AB5G97_RS04200 (AB5G97_04200) | yfbV | 849858..850298 (+) | 441 | WP_005339116.1 | terminus macrodomain insulation protein YfbV | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11314.33 Da Isoelectric Point: 9.6564
>NTDB_id=1056358 AB5G97_RS04185 WP_376869422.1 845418..845738(-) (comE1/comEA) [Aeromonas veronii strain Aer12]
MLMKKLSAIMLLACLPLFSQPVLAVDKAAPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAIMLLACLPLFSQPVLAVDKAAPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=1056358 AB5G97_RS04185 WP_376869422.1 845418..845738(-) (comE1/comEA) [Aeromonas veronii strain Aer12]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCCGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAACGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCCGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAACGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
50 |
100 |
0.528 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.018 |
100 |
0.491 |
| comEA | Vibrio cholerae strain A1552 |
48.113 |
100 |
0.481 |
| comEA | Vibrio cholerae C6706 |
48.113 |
100 |
0.481 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.33 |
91.509 |
0.406 |
| comEA | Legionella pneumophila str. Paris |
40.404 |
93.396 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.404 |
93.396 |
0.377 |