Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | LMH68_RS09335 | Genome accession | NZ_CP170175 |
| Coordinates | 2042131..2042760 (+) | Length | 209 a.a. |
| NCBI ID | WP_017061128.1 | Uniprot ID | A0A4U2DRE8 |
| Organism | Vibrio sp. F13 strain 10N.222.55.B3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2037131..2047760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH68_RS09320 (LMH68_009320) | - | 2037817..2040378 (-) | 2562 | WP_229647424.1 | penicillin-binding protein 1A | - |
| LMH68_RS09325 (LMH68_009325) | pilM | 2040530..2041555 (+) | 1026 | WP_017061130.1 | type IV pilus assembly protein PilM | Machinery gene |
| LMH68_RS09330 (LMH68_009330) | pilN | 2041539..2042138 (+) | 600 | WP_017061129.1 | PilN domain-containing protein | Machinery gene |
| LMH68_RS09335 (LMH68_009335) | pilO | 2042131..2042760 (+) | 630 | WP_017061128.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LMH68_RS09340 (LMH68_009340) | pilP | 2042747..2043265 (+) | 519 | WP_017063694.1 | pilus assembly protein PilP | Machinery gene |
| LMH68_RS09345 (LMH68_009345) | pilQ | 2043301..2045019 (+) | 1719 | WP_032545762.1 | type IV pilus secretin PilQ | Machinery gene |
| LMH68_RS09350 (LMH68_009350) | aroK | 2045196..2045714 (+) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| LMH68_RS09355 (LMH68_009355) | aroB | 2045740..2046828 (+) | 1089 | WP_017061124.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24327.91 Da Isoelectric Point: 4.7958
>NTDB_id=1055442 LMH68_RS09335 WP_017061128.1 2042131..2042760(+) (pilO) [Vibrio sp. F13 strain 10N.222.55.B3]
MANLQNRISRQNRMSLQDLDVDEITEWPLLPQLLVILVLMVLIQGVGTWLYLLPLDEELKQMKQQEQTLKTTLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISRQNRMSLQDLDVDEITEWPLLPQLLVILVLMVLIQGVGTWLYLLPLDEELKQMKQQEQTLKTTLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1055442 LMH68_RS09335 WP_017061128.1 2042131..2042760(+) (pilO) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGCTAACCTTCAAAATAGGATTAGTAGGCAAAACAGGATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATGGTGTTAATCCAAGGTGTTGGCACTTGGCTGTATCTGCTGC
CGCTCGACGAGGAACTGAAACAGATGAAGCAACAGGAGCAGACCTTAAAAACGACCTTGAGGATAAAGGCGAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGCCAGTTGGATGAGCTAACTAGTCGCTACGATTATCTATTAGAGCAGCTGCCCGTTCA
AAAGGAGTTAGCGAGCATGTTGGCCTCCGTGAATGAGCTCGGCTTGGATAACTCGCTGACCTTCACACGAATCGATTGGG
GGCAAAAGCAGAATAAGGAGTTTCTCTATCGATTGCCTCTCAATATAGAGCTGACAGGTGACTATCACGAGATTGGTGAC
TTCTCTGCTGCCATCGCCAAGCTGCCGCGTATTATTAGCTTTGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTTAATGATGAAACCCAATAG
ATGGCTAACCTTCAAAATAGGATTAGTAGGCAAAACAGGATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATGGTGTTAATCCAAGGTGTTGGCACTTGGCTGTATCTGCTGC
CGCTCGACGAGGAACTGAAACAGATGAAGCAACAGGAGCAGACCTTAAAAACGACCTTGAGGATAAAGGCGAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGCCAGTTGGATGAGCTAACTAGTCGCTACGATTATCTATTAGAGCAGCTGCCCGTTCA
AAAGGAGTTAGCGAGCATGTTGGCCTCCGTGAATGAGCTCGGCTTGGATAACTCGCTGACCTTCACACGAATCGATTGGG
GGCAAAAGCAGAATAAGGAGTTTCTCTATCGATTGCCTCTCAATATAGAGCTGACAGGTGACTATCACGAGATTGGTGAC
TTCTCTGCTGCCATCGCCAAGCTGCCGCGTATTATTAGCTTTGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTTAATGATGAAACCCAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.684 |
92.344 |
0.708 |
| pilO | Vibrio campbellii strain DS40M4 |
73.514 |
88.517 |
0.651 |