Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LMH68_RS09340 Genome accession   NZ_CP170175
Coordinates   2042747..2043265 (+) Length   172 a.a.
NCBI ID   WP_017063694.1    Uniprot ID   A0AA87C3T9
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2037747..2048265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS09320 (LMH68_009320) - 2037817..2040378 (-) 2562 WP_229647424.1 penicillin-binding protein 1A -
  LMH68_RS09325 (LMH68_009325) pilM 2040530..2041555 (+) 1026 WP_017061130.1 type IV pilus assembly protein PilM Machinery gene
  LMH68_RS09330 (LMH68_009330) pilN 2041539..2042138 (+) 600 WP_017061129.1 PilN domain-containing protein Machinery gene
  LMH68_RS09335 (LMH68_009335) pilO 2042131..2042760 (+) 630 WP_017061128.1 type 4a pilus biogenesis protein PilO Machinery gene
  LMH68_RS09340 (LMH68_009340) pilP 2042747..2043265 (+) 519 WP_017063694.1 pilus assembly protein PilP Machinery gene
  LMH68_RS09345 (LMH68_009345) pilQ 2043301..2045019 (+) 1719 WP_032545762.1 type IV pilus secretin PilQ Machinery gene
  LMH68_RS09350 (LMH68_009350) aroK 2045196..2045714 (+) 519 WP_017061125.1 shikimate kinase AroK -
  LMH68_RS09355 (LMH68_009355) aroB 2045740..2046828 (+) 1089 WP_017061124.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19129.22 Da        Isoelectric Point: 10.7515

>NTDB_id=1055443 LMH68_RS09340 WP_017063694.1 2042747..2043265(+) (pilP) [Vibrio sp. F13 strain 10N.222.55.B3]
MKPNSAFYSIVLMLALSGCKANQDSLQDFVAQVEAKARKDVEQLVPATEFTAATYQRRSLRPPFELPKEAIVQNQPLVKK
DCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQYVQINETLPDGLG
CWHKRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1055443 LMH68_RS09340 WP_017063694.1 2042747..2043265(+) (pilP) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGAAACCCAATAGCGCGTTTTACTCAATCGTATTGATGCTTGCGTTGTCAGGCTGCAAAGCTAATCAAGACTCACTGCA
AGATTTTGTGGCGCAGGTTGAAGCCAAGGCGAGAAAAGATGTCGAGCAACTTGTCCCAGCAACTGAATTCACGGCGGCGA
CTTATCAGCGCCGATCTTTGCGTCCTCCCTTTGAACTGCCTAAAGAAGCCATTGTGCAAAACCAACCCTTGGTTAAGAAA
GACTGTTGGCAACCCAGCGCCCGTTCTCGTAATGGCAAGTTAGAGAAGTACCCGCTGAGTAAGCTTCGTTTAAGAGGCGT
GATGGGCAGTGGCTCAAGCGTGTTTGGCTTAGTGCAAACACCCAAAGGCAACGTGGTAAACGTCAAGAAAGGCCAGTTTA
TCGGCTTAAACAATGGCCGAGTTACTAAGGTGACGAGCCAATACGTTCAGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCATAAGCGCAACGTTAGGCTGGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

63.75

93.023

0.593
  pilP Vibrio campbellii strain DS40M4

55.03

98.256

0.541

Multiple sequence alignment