Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCU28_RS14135 | Genome accession | NZ_CP170022 |
| Coordinates | 3175523..3175996 (+) | Length | 157 a.a. |
| NCBI ID | WP_016790756.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.45.B7 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3170523..3180996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCU28_RS14120 (BCU28_14120) | pdhR | 3172453..3173214 (-) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BCU28_RS14125 (BCU28_14125) | ampD | 3173696..3174295 (-) | 600 | WP_016790757.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCU28_RS14130 (BCU28_14130) | nadC | 3174379..3175269 (+) | 891 | WP_004738163.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCU28_RS14135 (BCU28_14135) | pilA | 3175523..3175996 (+) | 474 | WP_016790756.1 | pilin | Machinery gene |
| BCU28_RS14140 (BCU28_14140) | pilB | 3175996..3177681 (+) | 1686 | WP_016790755.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCU28_RS14145 (BCU28_14145) | pilC | 3177696..3178925 (+) | 1230 | WP_016790754.1 | type II secretion system F family protein | Machinery gene |
| BCU28_RS14150 (BCU28_14150) | pilD | 3178992..3179861 (+) | 870 | WP_016790753.1 | prepilin peptidase | Machinery gene |
| BCU28_RS14155 (BCU28_14155) | coaE | 3179864..3180478 (+) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16745.10 Da Isoelectric Point: 5.8402
>NTDB_id=1054699 BCU28_RS14135 WP_016790756.1 3175523..3175996(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MNNKSKRTNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHESASDGDTFKTNCVST
TDNIPAAFDLNSMNILAIGGTSSGAVDVRVKATAIKGPIAANETYVMTATYTTNGITWESKCYIDAALNNQQETYCP
MNNKSKRTNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHESASDGDTFKTNCVST
TDNIPAAFDLNSMNILAIGGTSSGAVDVRVKATAIKGPIAANETYVMTATYTTNGITWESKCYIDAALNNQQETYCP
Nucleotide
Download Length: 474 bp
>NTDB_id=1054699 BCU28_RS14135 WP_016790756.1 3175523..3175996(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCGATTATTGGGAT
CTTATCGGCGTTTGCTGTTCCTGCTTATCAAGATTACACGAAAAAAGCGACTCTATCCGAATTTCCGAAAGCAGCCGCTG
CTGTAAAAATGGCTGTTGAATTATGTGCACATGAAAGTGCTTCGGATGGTGATACATTTAAAACAAATTGTGTAAGTACT
ACCGACAATATTCCCGCAGCATTTGACCTTAACAGTATGAACATATTAGCTATTGGAGGCACCAGTTCAGGAGCTGTAGA
TGTAAGAGTCAAAGCGACTGCAATCAAAGGGCCTATTGCTGCAAATGAAACTTACGTAATGACAGCAACGTATACTACAA
ATGGCATCACGTGGGAGAGTAAGTGTTATATAGACGCAGCATTGAACAATCAACAAGAGACCTACTGCCCATAA
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCGATTATTGGGAT
CTTATCGGCGTTTGCTGTTCCTGCTTATCAAGATTACACGAAAAAAGCGACTCTATCCGAATTTCCGAAAGCAGCCGCTG
CTGTAAAAATGGCTGTTGAATTATGTGCACATGAAAGTGCTTCGGATGGTGATACATTTAAAACAAATTGTGTAAGTACT
ACCGACAATATTCCCGCAGCATTTGACCTTAACAGTATGAACATATTAGCTATTGGAGGCACCAGTTCAGGAGCTGTAGA
TGTAAGAGTCAAAGCGACTGCAATCAAAGGGCCTATTGCTGCAAATGAAACTTACGTAATGACAGCAACGTATACTACAA
ATGGCATCACGTGGGAGAGTAAGTGTTATATAGACGCAGCATTGAACAATCAACAAGAGACCTACTGCCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.17 |
97.452 |
0.567 |
| pilA | Haemophilus influenzae 86-028NP |
39.333 |
95.541 |
0.376 |
| comP | Acinetobacter baylyi ADP1 |
40.426 |
89.809 |
0.363 |