Detailed information NTG1054702

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCU28_RS14150
• Genome accession: NZ_CP170022
• Coordinates: 3178992..3179861 (+)
• Length: 289 a.a.
• NCBI ID: WP_016790753.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.45.B7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3173992..3184861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU28_RS14130 (BCU28_14130)	nadC	3174379..3175269 (+)	891	WP_004738163.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BCU28_RS14135 (BCU28_14135)	pilA	3175523..3175996 (+)	474	WP_016790756.1	pilin	Machinery gene
BCU28_RS14140 (BCU28_14140)	pilB	3175996..3177681 (+)	1686	WP_016790755.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCU28_RS14145 (BCU28_14145)	pilC	3177696..3178925 (+)	1230	WP_016790754.1	type II secretion system F family protein	Machinery gene
BCU28_RS14150 (BCU28_14150)	pilD	3178992..3179861 (+)	870	WP_016790753.1	prepilin peptidase	Machinery gene
BCU28_RS14155 (BCU28_14155)	coaE	3179864..3180478 (+)	615	WP_010435920.1	dephospho-CoA kinase	-
BCU28_RS14160 (BCU28_14160)	zapD	3180505..3181245 (+)	741	WP_010435917.1	cell division protein ZapD	-
BCU28_RS14165 (BCU28_14165)	yacG	3181327..3181524 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCU28_RS14170 (BCU28_14170)	ltrA	3181803..3183086 (-)	1284	WP_016767640.1	group II intron reverse transcriptase/maturase	-
BCU28_RS14175 (BCU28_14175)	rplS	3183875..3184228 (-)	354	WP_004735514.1	50S ribosomal protein L19	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32570.75 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054702 BCU28_RS14150 WP_016790753.1 3178992..3179861(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIIMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCQKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054702 BCU28_RS14150 WP_016790753.1 3178992..3179861(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATAATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTTTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCAGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.087	100	0.751
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter nosocomialis M2	50.562	92.388	0.467
pilD	Acinetobacter baumannii D1279779	50.187	92.388	0.464
pilD	Neisseria gonorrhoeae MS11	47.876	89.619	0.429