Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1Q80_RS00175 Genome accession   NZ_CP169368
Coordinates   33123..33626 (-) Length   167 a.a.
NCBI ID   WP_386694983.1    Uniprot ID   -
Organism   Lonepinella sp. MS14435     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 28123..38626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q80_RS00145 (O1Q80_00029) - 28626..29033 (+) 408 WP_386687838.1 DUF2251 domain-containing protein -
  O1Q80_RS00150 (O1Q80_00030) gorA 29161..30531 (+) 1371 WP_386694977.1 glutathione-disulfide reductase -
  O1Q80_RS00155 (O1Q80_00031) - 30557..30895 (+) 339 WP_386694979.1 carboxymuconolactone decarboxylase family protein -
  O1Q80_RS00160 (O1Q80_00032) - 30973..31695 (-) 723 WP_386687844.1 MgtC/SapB family protein -
  O1Q80_RS00165 (O1Q80_00033) aroE 31695..32504 (-) 810 WP_386694981.1 shikimate dehydrogenase -
  O1Q80_RS00170 (O1Q80_00034) - 32506..33051 (-) 546 WP_386687849.1 Sua5/YciO/YrdC/YwlC family protein -
  O1Q80_RS00175 (O1Q80_00035) ssb 33123..33626 (-) 504 WP_386694983.1 single-stranded DNA-binding protein Machinery gene
  O1Q80_RS00180 (O1Q80_00036) uvrA 33777..36608 (+) 2832 WP_386694985.1 excinuclease ABC subunit UvrA -
  O1Q80_RS00185 (O1Q80_00037) - 36719..37771 (+) 1053 WP_386694987.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18978.71 Da        Isoelectric Point: 5.3111

>NTDB_id=1051012 O1Q80_RS00175 WP_386694983.1 33123..33626(-) (ssb) [Lonepinella sp. MS14435]
MAGVNKVIIVGRLGNDPEVRTMPNGEAVANISVATSESWTDKNTGERREQTEWHRIVFYRRQAEVVGEYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLDSRNANQNGYNQDNSNFAGNSNFGGQQQSSGYSRQAPQTQKAKPVNEPPMDN
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1051012 O1Q80_RS00175 WP_386694983.1 33123..33626(-) (ssb) [Lonepinella sp. MS14435]
ATGGCAGGAGTTAATAAAGTCATTATTGTAGGTCGTTTAGGTAACGATCCAGAAGTGCGTACCATGCCGAACGGTGAAGC
CGTAGCAAATATTAGTGTCGCGACCAGTGAAAGTTGGACAGATAAAAATACGGGTGAACGCCGTGAACAAACCGAATGGC
ATCGTATTGTATTTTATCGCCGTCAAGCAGAAGTCGTTGGTGAATATTTACGTAAAGGCTCACAGGTTTATGTGGAAGGA
CGCTTACGTACTAGAAAATGGCAAGATCAAAATGGGCAAGATCGCTATACCACAGAAATCCAAGGGGATGTCATGCAGAT
GTTGGATAGCCGTAATGCTAATCAAAATGGATATAATCAAGATAATAGCAATTTTGCAGGTAATAGTAATTTTGGTGGTC
AACAACAATCAAGTGGTTACTCGCGTCAAGCACCACAAACTCAAAAAGCGAAACCAGTGAATGAACCACCAATGGATAAT
TTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.894

100

0.731
  ssb Vibrio cholerae strain A1552

58.286

100

0.611
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.491
  ssb Neisseria meningitidis MC58

46.857

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.395
  ssb Latilactobacillus sakei subsp. sakei 23K

36.571

100

0.383

Multiple sequence alignment