Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1Q82_RS00175 Genome accession   NZ_CP169367
Coordinates   33122..33625 (-) Length   167 a.a.
NCBI ID   WP_386687851.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 28122..38625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS00145 (O1Q82_00029) - 28628..29035 (+) 408 WP_386687838.1 DUF2251 domain-containing protein -
  O1Q82_RS00150 (O1Q82_00030) gorA 29163..30533 (+) 1371 WP_386687840.1 glutathione-disulfide reductase -
  O1Q82_RS00155 (O1Q82_00031) - 30559..30894 (+) 336 WP_386687842.1 carboxymuconolactone decarboxylase family protein -
  O1Q82_RS00160 (O1Q82_00032) - 30972..31694 (-) 723 WP_386687844.1 MgtC/SapB family protein -
  O1Q82_RS00165 (O1Q82_00033) aroE 31694..32503 (-) 810 WP_386687846.1 shikimate dehydrogenase -
  O1Q82_RS00170 (O1Q82_00034) - 32505..33050 (-) 546 WP_386687849.1 Sua5/YciO/YrdC/YwlC family protein -
  O1Q82_RS00175 (O1Q82_00035) ssb 33122..33625 (-) 504 WP_386687851.1 single-stranded DNA-binding protein Machinery gene
  O1Q82_RS00180 (O1Q82_00036) uvrA 33776..36607 (+) 2832 WP_386687853.1 excinuclease ABC subunit UvrA -
  O1Q82_RS00185 (O1Q82_00037) - 36718..37770 (+) 1053 WP_386687855.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18948.69 Da        Isoelectric Point: 5.3111

>NTDB_id=1050986 O1Q82_RS00175 WP_386687851.1 33122..33625(-) (ssb) [Lonepinella sp. MS14437]
MAGVNKVIIVGRLGNDPEVRTMPNGEAVANISVATSESWTDKNTGERREQTEWHRIVFYRRQAEVVGEYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLDSRNANQNGYNQDNSNFAGNGNFGGQQQSSGYSRQAPQTQKAKPVNEPPMDN
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1050986 O1Q82_RS00175 WP_386687851.1 33122..33625(-) (ssb) [Lonepinella sp. MS14437]
ATGGCAGGAGTTAATAAAGTCATTATTGTAGGTCGTTTAGGTAACGATCCAGAAGTGCGTACCATGCCGAACGGTGAAGC
TGTAGCAAATATTAGTGTCGCGACCAGTGAAAGTTGGACAGATAAAAATACGGGTGAACGCCGTGAACAAACCGAATGGC
ATCGTATTGTATTTTATCGCCGTCAAGCAGAAGTCGTTGGTGAATATTTACGTAAAGGCTCACAGGTTTATGTGGAAGGA
CGTTTACGTACTAGAAAATGGCAAGATCAAAACGGGCAAGATCGCTATACCACAGAAATCCAAGGGGATGTCATGCAGAT
GTTGGATAGCCGTAATGCTAATCAAAATGGATATAATCAAGATAATAGCAATTTTGCAGGTAACGGTAATTTTGGTGGTC
AACAGCAATCAAGTGGTTACTCGCGTCAAGCACCACAAACTCAAAAAGCGAAACCAGTGAATGAACCACCAATGGATAAT
TTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.894

100

0.731
  ssb Vibrio cholerae strain A1552

58.857

100

0.617
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.491
  ssb Neisseria meningitidis MC58

46.857

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.395
  ssb Latilactobacillus sakei subsp. sakei 23K

36

100

0.377

Multiple sequence alignment