Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8954_RS02485 Genome accession   NZ_AP028365
Coordinates   470231..470881 (-) Length   216 a.a.
NCBI ID   WP_032593192.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10632     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 460407..487870 470231..470881 within 0


Gene organization within MGE regions


Location: 460407..487870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8954_RS02400 (B10632_04700) - 460407..461609 (+) 1203 WP_032593176.1 tyrosine-type recombinase/integrase -
  R8954_RS02405 (B10632_04710) - 461606..461776 (-) 171 WP_002864902.1 helix-turn-helix transcriptional regulator -
  R8954_RS02410 (B10632_04720) - 461769..462311 (-) 543 WP_032593178.1 pentapeptide repeat-containing protein -
  R8954_RS02415 (B10632_04730) - 462299..462505 (-) 207 WP_032593181.1 hypothetical protein -
  R8954_RS02420 (B10632_04740) - 462502..463188 (-) 687 WP_317726189.1 hypothetical protein -
  R8954_RS02425 (B10632_04750) - 463191..463610 (-) 420 WP_032593187.1 YopX family protein -
  R8954_RS02430 (B10632_04760) - 463643..464047 (-) 405 WP_411543175.1 hypothetical protein -
  R8954_RS09590 - 464093..464215 (-) 123 Protein_467 antA/AntB antirepressor family protein -
  R8954_RS02435 (B10632_04770) - 464403..464666 (-) 264 WP_011049695.1 hypothetical protein -
  R8954_RS02440 (B10632_04780) - 464647..465342 (-) 696 WP_011049696.1 hypothetical protein -
  R8954_RS02445 (B10632_04790) - 465342..466079 (-) 738 WP_002873576.1 hypothetical protein -
  R8954_RS02450 (B10632_04800) - 466081..466935 (-) 855 WP_011049697.1 lambda-exonuclease family protein -
  R8954_RS02455 (B10632_04810) - 466937..467164 (-) 228 WP_002874355.1 helix-turn-helix domain-containing protein -
  R8954_RS02460 (B10632_04820) - 467155..467412 (-) 258 WP_002865124.1 hypothetical protein -
  R8954_RS02465 (B10632_04830) - 467403..467672 (-) 270 WP_002874357.1 hypothetical protein -
  R8954_RS02470 (B10632_04840) - 468233..468505 (-) 273 WP_032593190.1 hypothetical protein -
  R8954_RS02475 (B10632_04850) - 468649..469380 (+) 732 WP_002861653.1 hypothetical protein -
  R8954_RS02480 (B10632_04860) - 469414..470238 (-) 825 WP_002874362.1 hypothetical protein -
  R8954_RS02485 (B10632_04870) CJE0566 470231..470881 (-) 651 WP_032593192.1 DNA/RNA non-specific endonuclease Regulator
  R8954_RS02490 (B10632_04880) - 470897..471394 (-) 498 WP_032593193.1 hypothetical protein -
  R8954_RS02495 (B10632_04890) - 471387..472592 (-) 1206 WP_032593196.1 AAA family ATPase -
  R8954_RS02500 (B10632_04900) - 472695..473429 (-) 735 WP_032593197.1 helix-turn-helix transcriptional regulator -
  R8954_RS02505 (B10632_04910) - 473541..473759 (+) 219 WP_002826741.1 hypothetical protein -
  R8954_RS02510 (B10632_04920) - 473756..474226 (+) 471 WP_002865055.1 hypothetical protein -
  R8954_RS02515 (B10632_04930) - 474186..474563 (+) 378 WP_002826744.1 hypothetical protein -
  R8954_RS02520 (B10632_04940) - 474560..475561 (+) 1002 WP_032593200.1 hypothetical protein -
  R8954_RS02525 (B10632_04950) - 475572..476222 (+) 651 WP_032593202.1 hypothetical protein -
  R8954_RS02530 (B10632_04960) - 476240..476620 (+) 381 WP_002788333.1 hypothetical protein -
  R8954_RS02535 (B10632_04970) - 476620..477006 (+) 387 WP_002861661.1 terminase small subunit -
  R8954_RS02540 (B10632_04980) - 477003..478295 (+) 1293 WP_032593205.1 terminase -
  R8954_RS02545 (B10632_04990) - 478285..478557 (+) 273 WP_002781524.1 hypothetical protein -
  R8954_RS02550 (B10632_05000) - 478538..480076 (+) 1539 WP_317726193.1 hypothetical protein -
  R8954_RS02555 (B10632_05010) - 480069..480272 (+) 204 WP_002875072.1 hypothetical protein -
  R8954_RS02560 (B10632_05020) - 480262..480909 (+) 648 WP_002875073.1 hypothetical protein -
  R8954_RS02565 (B10632_05030) - 480920..481300 (+) 381 WP_032593208.1 hypothetical protein -
  R8954_RS02570 (B10632_05040) - 481565..482776 (+) 1212 WP_011049716.1 hypothetical protein -
  R8954_RS02575 (B10632_05050) - 482776..486456 (+) 3681 WP_032593210.1 PBECR2 nuclease fold domain-containing protein -
  R8954_RS02580 (B10632_05060) - 486836..487870 (+) 1035 WP_002874378.1 DUF5309 family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25364.97 Da        Isoelectric Point: 9.9933

>NTDB_id=104881 R8954_RS02485 WP_032593192.1 470231..470881(-) (CJE0566) [Campylobacter jejuni strain BCH-10632]
MKKLIILSLLTTLALADYNQYKPSEDFAKHFTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104881 R8954_RS02485 WP_032593192.1 470231..470881(-) (CJE0566) [Campylobacter jejuni strain BCH-10632]
ATGAAAAAACTTATAATCTTATCATTATTGACAACTCTAGCCTTAGCTGATTATAACCAATACAAACCAAGTGAAGATTT
TGCTAAGCATTTTACTAAGCAAAACTGCTCACAAGTTTTGGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACCACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GTGATGGATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

87.442

99.537

0.87
  CJE1441 Campylobacter jejuni RM1221

86.977

99.537

0.866

Multiple sequence alignment