Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8954_RS03335 Genome accession   NZ_AP028365
Coordinates   633953..634726 (+) Length   257 a.a.
NCBI ID   WP_002867721.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10632     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 628953..639726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8954_RS03320 (B10632_06520) - 629802..631736 (-) 1935 WP_317726228.1 RNB domain-containing ribonuclease -
  R8954_RS03325 (B10632_06530) ilvC 631855..632877 (+) 1023 WP_283804171.1 ketol-acid reductoisomerase -
  R8954_RS03330 (B10632_06540) - 632881..633963 (+) 1083 WP_061099770.1 divergent polysaccharide deacetylase family protein -
  R8954_RS03335 (B10632_06550) dprA 633953..634726 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  R8954_RS03340 (B10632_06560) ruvX 634723..635106 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8954_RS03345 (B10632_06570) - 635135..635974 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8954_RS03350 (B10632_06580) msrA 636150..636647 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8954_RS03355 (B10632_06590) ppa 636689..637207 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8954_RS03360 (B10632_06600) adk 637217..637795 (-) 579 WP_002859580.1 adenylate kinase -
  R8954_RS03365 (B10632_06610) aspS 637792..639543 (-) 1752 WP_317726230.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28878.64 Da        Isoelectric Point: 6.4874

>NTDB_id=104883 R8954_RS03335 WP_002867721.1 633953..634726(+) (dprA) [Campylobacter jejuni strain BCH-10632]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
TKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104883 R8954_RS03335 WP_002867721.1 633953..634726(+) (dprA) [Campylobacter jejuni strain BCH-10632]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
ACAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment