Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEN9H_RS26240 Genome accession   NZ_CP168562
Coordinates   5987279..5988805 (+) Length   508 a.a.
NCBI ID   WP_413672629.1    Uniprot ID   -
Organism   Massilia cellulosiltytica strain CT11-92     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5982279..5993805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN9H_RS26215 (ACEN9H_26220) - 5983631..5985184 (-) 1554 WP_413672627.1 ammonium transporter -
  ACEN9H_RS26220 (ACEN9H_26225) - 5985195..5985533 (-) 339 WP_025511601.1 P-II family nitrogen regulator -
  ACEN9H_RS26225 (ACEN9H_26230) - 5985546..5986292 (-) 747 WP_056122125.1 TorF family putative porin -
  ACEN9H_RS26230 (ACEN9H_26235) - 5986559..5986807 (+) 249 WP_371765955.1 accessory factor UbiK family protein -
  ACEN9H_RS26235 (ACEN9H_26240) - 5986811..5987128 (-) 318 WP_413672628.1 hypothetical protein -
  ACEN9H_RS26240 (ACEN9H_26245) comM 5987279..5988805 (+) 1527 WP_413672629.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEN9H_RS26245 (ACEN9H_26250) - 5988791..5989996 (-) 1206 WP_413672630.1 MFS transporter -
  ACEN9H_RS26250 (ACEN9H_26255) - 5990102..5991061 (-) 960 WP_056123537.1 GlxA family transcriptional regulator -
  ACEN9H_RS26255 (ACEN9H_26260) - 5991324..5992085 (+) 762 WP_413672631.1 SDR family oxidoreductase -
  ACEN9H_RS26260 (ACEN9H_26265) - 5992113..5992628 (+) 516 WP_413672632.1 hypothetical protein -
  ACEN9H_RS26265 (ACEN9H_26270) - 5992630..5993370 (+) 741 WP_056122101.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54502.42 Da        Isoelectric Point: 7.7977

>NTDB_id=1044570 ACEN9H_RS26240 WP_413672629.1 5987279..5988805(+) (comM) [Massilia cellulosiltytica strain CT11-92]
MSLAVLRSRALAGMEAPAVSVEVHLANGLPAMNIVGLADAEVRESKDRVRAALQNSGFEVPSRRITINLAPAELPKESGR
FDLPIALGILAASDQIPAAALDGYEFAGELSLSGELRPVRGALAMSFAMLRQHADEDTSARAFVLPWANADEAALVTDAV
IYPARSLLDVCAHFAAKSDEARLVRYRPVPSAGPPVYPDFADVKGQQQVKRALEVAAAGLHSVLLIGPPGAGKSMLASRF
PGLLPPLRQEEALETAALQSLAGSFAIARWRKRPFRSPHHTSSGVALVGGGQVPRPGEISLAHHGVLFLDELPEFDRKVL
EVLREPLETGAITISRAARQADFPASFQLIAAMNPCPCGWLGHPSGKCRCTPDAVQRYQDRISGPLLDRIDIQVPVAAMT
PDTMAQLADGEPSAAIAARVTQAHARQLSRQGKANRKLTTREIDHHCHLDTAAARLLGDAMQHLHWSARAYHRVLKVART
IADLAGADTVNAQHVAEAIQYRRGLCDH

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1044570 ACEN9H_RS26240 WP_413672629.1 5987279..5988805(+) (comM) [Massilia cellulosiltytica strain CT11-92]
ATGAGCCTCGCCGTCCTCAGAAGCCGCGCCCTGGCCGGCATGGAAGCACCGGCCGTCAGCGTCGAAGTTCACCTGGCCAA
TGGGCTACCGGCGATGAATATCGTGGGGTTGGCGGACGCCGAGGTGCGCGAATCGAAAGACCGCGTACGCGCCGCGCTGC
AGAACTCGGGCTTCGAGGTTCCCAGCCGGCGCATCACCATCAATCTCGCGCCGGCCGAGCTGCCGAAAGAATCGGGACGG
TTCGACCTGCCGATCGCGCTGGGCATTCTCGCGGCGTCGGACCAGATCCCGGCCGCCGCGCTTGACGGCTACGAATTCGC
CGGCGAGCTGTCGCTGTCGGGAGAATTGCGCCCCGTGCGCGGTGCGCTGGCGATGAGCTTTGCCATGCTGCGCCAGCACG
CCGACGAGGACACGTCCGCGCGCGCCTTCGTGCTGCCGTGGGCGAACGCGGACGAGGCGGCCCTCGTGACGGACGCCGTC
ATCTACCCTGCCCGCTCGCTGCTGGACGTGTGCGCGCACTTCGCCGCGAAGTCGGACGAGGCGCGGCTCGTGCGCTACCG
CCCCGTGCCGTCCGCCGGTCCGCCCGTGTATCCGGACTTCGCCGACGTCAAGGGCCAGCAGCAGGTCAAGCGCGCGCTCG
AGGTAGCGGCCGCGGGCCTGCACTCCGTGCTGCTGATCGGACCGCCGGGCGCCGGCAAGAGCATGCTCGCGTCGCGCTTT
CCCGGCCTGCTGCCGCCGCTGCGCCAGGAGGAAGCGCTGGAGACGGCCGCGCTCCAGTCGCTCGCGGGCAGCTTCGCCAT
CGCGCGCTGGAGAAAACGTCCGTTCCGCAGTCCGCACCATACGAGTTCCGGCGTGGCCCTCGTCGGCGGCGGCCAGGTGC
CCCGTCCCGGAGAAATCTCGCTCGCCCACCATGGCGTATTGTTCCTCGACGAGTTGCCGGAGTTCGACCGGAAAGTCCTC
GAAGTGCTGCGCGAGCCGCTGGAAACGGGTGCCATCACGATCTCGCGTGCCGCGCGCCAGGCCGACTTCCCCGCCAGTTT
CCAGTTGATTGCGGCGATGAATCCATGTCCGTGCGGCTGGCTCGGCCACCCGTCGGGCAAGTGCCGCTGCACGCCGGACG
CCGTGCAGCGCTACCAGGACCGCATCTCCGGCCCCCTGCTCGACCGCATCGACATCCAGGTGCCCGTGGCCGCGATGACG
CCGGACACGATGGCGCAACTGGCCGACGGCGAGCCCAGCGCCGCCATTGCCGCGCGCGTCACGCAGGCGCACGCGCGCCA
GTTGTCGCGCCAGGGCAAGGCCAACCGGAAGCTGACGACGCGCGAGATCGACCACCACTGCCACCTCGACACCGCCGCCG
CGCGCCTGCTGGGCGATGCCATGCAGCACCTGCACTGGTCCGCGCGCGCCTATCACCGGGTGTTGAAGGTGGCGCGCACG
ATCGCCGATCTCGCCGGCGCCGATACGGTCAACGCCCAGCACGTGGCCGAGGCGATCCAGTACCGGCGCGGCTTATGCGA
CCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.277

99.409

0.52
  comM Vibrio cholerae strain A1552

51.881

99.409

0.516
  comM Legionella pneumophila strain ERS1305867

50.295

100

0.504
  comM Legionella pneumophila str. Paris

50.295

100

0.504
  comM Glaesserella parasuis strain SC1401

49.803

100

0.498
  comM Haemophilus influenzae Rd KW20

48.622

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.457

Multiple sequence alignment