Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACEPXG_RS19190 Genome accession   NZ_CP168496
Coordinates   3941139..3941648 (-) Length   169 a.a.
NCBI ID   WP_151701886.1    Uniprot ID   -
Organism   Psychrobacillus sp. L4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3936139..3946648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXG_RS19170 (ACEPXG_19170) rplI 3937337..3937786 (-) 450 WP_391206003.1 50S ribosomal protein L9 -
  ACEPXG_RS19175 (ACEPXG_19175) - 3937783..3939759 (-) 1977 WP_391206006.1 DHH family phosphoesterase -
  ACEPXG_RS19180 (ACEPXG_19180) - 3939772..3940713 (-) 942 WP_391206009.1 YybS family protein -
  ACEPXG_RS19185 (ACEPXG_19185) rpsR 3940856..3941092 (-) 237 WP_142608051.1 30S ribosomal protein S18 -
  ACEPXG_RS19190 (ACEPXG_19190) ssbA 3941139..3941648 (-) 510 WP_151701886.1 single-stranded DNA-binding protein Machinery gene
  ACEPXG_RS19195 (ACEPXG_19195) rpsF 3941687..3941980 (-) 294 WP_151701887.1 30S ribosomal protein S6 -
  ACEPXG_RS19200 (ACEPXG_19200) - 3942208..3942750 (+) 543 WP_391206012.1 DUF3267 domain-containing protein -
  ACEPXG_RS19205 (ACEPXG_19205) ychF 3943632..3944732 (-) 1101 WP_391206015.1 redox-regulated ATPase YchF -
  ACEPXG_RS19210 (ACEPXG_19210) - 3944820..3945020 (-) 201 WP_151701889.1 DUF951 domain-containing protein -
  ACEPXG_RS19215 (ACEPXG_19215) - 3945067..3945891 (-) 825 WP_391206019.1 mechanosensitive ion channel family protein -
  ACEPXG_RS19220 (ACEPXG_19220) yyaC 3945970..3946569 (+) 600 WP_391206022.1 spore protease YyaC -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18833.65 Da        Isoelectric Point: 4.7719

>NTDB_id=1044281 ACEPXG_RS19190 WP_151701886.1 3941139..3941648(-) (ssbA) [Psychrobacillus sp. L4]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSSSGERSQGGQPFGSGQQQQQQNSFPTYQQNQPMNQQNYTRVDEDPFANSSGPI
EVSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1044281 ACEPXG_RS19190 WP_151701886.1 3941139..3941648(-) (ssbA) [Psychrobacillus sp. L4]
ATGATTAACCGTGTCGTTTTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGCTATACACCAAGTGGTGTTGCAATGGC
AAGATTTACACTAGCTGTCAATCGAACATTCTCCAACCAACAAGGTGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAGCAAGCGGAAAACACAGCTAACTTTTTGAAAAAAGGAAGTTTAGCTGGGGTTGAAGGGCGTATTCAGACAGGC
AGTTATGAAGGACAAGATGGAAAACGTGTTTATACGACGGATGTTGTCGCAGACAGTGTTCAGTTCTTAGAGCCACGTAG
TAGTTCTGGTGAACGTAGCCAAGGGGGACAACCATTTGGTAGCGGGCAACAGCAACAACAACAAAATTCATTTCCGACAT
ATCAGCAAAACCAACCAATGAATCAGCAAAATTATACACGTGTTGATGAAGATCCATTTGCAAACAGTAGTGGGCCAATC
GAAGTATCGGATGACGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.218

100

0.651
  ssb Latilactobacillus sakei subsp. sakei 23K

56.395

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.722

0.391
  ssb Neisseria meningitidis MC58

35.593

100

0.373
  ssb Neisseria gonorrhoeae MS11

35.593

100

0.373
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.367

Multiple sequence alignment