Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACEL84_RS11450 Genome accession   NZ_CP168212
Coordinates   2503599..2503892 (-) Length   97 a.a.
NCBI ID   WP_261892987.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2498599..2508892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS11425 (ACEL84_11425) lapB 2498828..2499997 (-) 1170 WP_261892982.1 lipopolysaccharide assembly protein LapB -
  ACEL84_RS11430 (ACEL84_11430) - 2500023..2500298 (-) 276 WP_261892983.1 LapA family protein -
  ACEL84_RS11435 (ACEL84_11435) ihfB 2500437..2500751 (-) 315 WP_261892984.1 integration host factor subunit beta -
  ACEL84_RS11440 (ACEL84_11440) rpsA 2500958..2502628 (-) 1671 WP_261892985.1 30S ribosomal protein S1 -
  ACEL84_RS11445 (ACEL84_11445) cmk 2502739..2503422 (-) 684 WP_261892986.1 (d)CMP kinase -
  ACEL84_RS11450 (ACEL84_11450) comEA 2503599..2503892 (-) 294 WP_261892987.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACEL84_RS11455 (ACEL84_11455) ppiD 2504036..2505886 (-) 1851 WP_261892988.1 peptidylprolyl isomerase -
  ACEL84_RS11460 (ACEL84_11460) - 2506039..2506311 (-) 273 WP_261892989.1 HU family DNA-binding protein -
  ACEL84_RS11465 (ACEL84_11465) lon 2506505..2508856 (-) 2352 WP_261892990.1 endopeptidase La -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10520.35 Da        Isoelectric Point: 10.7528

>NTDB_id=1043105 ACEL84_RS11450 WP_261892987.1 2503599..2503892(-) (comEA) [Vibrio porteresiae strain MSSRF31]
MNHKHLLLSTLLLLGIPSVQAATNSTQKSEQVQITVNVNKASAEELSTLLKGVGLSKAKAIVQYREANGPFKTKDDLAKV
KGIGKSIIKKNEQRILL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1043105 ACEL84_RS11450 WP_261892987.1 2503599..2503892(-) (comEA) [Vibrio porteresiae strain MSSRF31]
ATGAACCACAAACACTTACTGCTCAGTACTTTGTTGCTATTAGGTATTCCGAGTGTTCAAGCCGCGACCAATAGCACACA
AAAAAGCGAACAAGTTCAGATCACGGTCAACGTGAATAAAGCCTCTGCAGAGGAGCTATCGACGTTACTCAAAGGTGTAG
GTTTGTCGAAAGCCAAAGCGATAGTGCAATATCGTGAAGCAAACGGTCCATTTAAAACCAAGGATGACCTCGCCAAAGTG
AAAGGTATCGGTAAATCGATCATCAAGAAAAACGAGCAACGCATTTTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

56.522

94.845

0.536
  comEA Vibrio cholerae strain A1552

56.522

94.845

0.536
  comEA Vibrio parahaemolyticus RIMD 2210633

53.261

94.845

0.505
  comEA Vibrio campbellii strain DS40M4

51.064

96.907

0.495
  comEA Legionella pneumophila str. Paris

37.113

100

0.371
  comEA Legionella pneumophila strain ERS1305867

37.113

100

0.371

Multiple sequence alignment