Detailed information NTG1040979

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABRP31_RS15935
• Genome accession: NZ_CP167995
• Coordinates: 3477679..3478851 (-)
• Length: 390 a.a.
• NCBI ID: WP_087263936.1
• Uniprot ID: A0A1Y3P700
• Organism: Pseudomonas caspiana strain WHRI 7043
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3472679..3483851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP31_RS15920 (ABRP31_015920)	-	3473357..3474772 (+)	1416	WP_349969273.1	sigma 54-interacting transcriptional regulator	-
ABRP31_RS15925 (ABRP31_015925)	-	3475270..3476661 (+)	1392	WP_349969274.1	GntP family permease	-
ABRP31_RS15930 (ABRP31_015930)	-	3476672..3477442 (+)	771	WP_349969276.1	3-hydroxybutyrate dehydrogenase	-
ABRP31_RS15935 (ABRP31_015935)	pilU	3477679..3478851 (-)	1173	WP_087263936.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABRP31_RS15940 (ABRP31_015940)	-	3479037..3480044 (-)	1008	WP_349969277.1	hypothetical protein	-
ABRP31_RS15945 (ABRP31_015945)	-	3480041..3481705 (-)	1665	WP_349969278.1	hypothetical protein	-
ABRP31_RS15950 (ABRP31_015950)	-	3481702..3483405 (-)	1704	WP_087263931.1	molecular chaperone HscC	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 42700.82 Da
• Isoelectric Point: 6.3737

>NTDB_id=1040979 ABRP31_RS15935 WP_087263936.1 3477679..3478851(-) (pilU) [Pseudomonas caspiana strain WHRI 7043]
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGTESLKPGQVALVADGLMDAEQKLEFHRELEMNLAVSMAGIGR
FRINIFMQRNEVSIVARNIKLDIPRFEDLHLPPVLLDVIMEKHGLVLFVGATGSGKSTSLAALIDHRNRNASGHIITIED
PVEFIHRHKKSIINQREVGVDTRSFRAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLCLSTLHANNANQALDRI
INFFPEERRQQLLQDLGNNLKAFVSQRLVKTVDGKRRAAVEVMMGTPTIRDLIQRNELTELKGIMEKSGNLGMQTFDGAL
FDLAAAGVISEEEALKYADSQNNVRLRLKLHGEGVTANPTAAPSAPVGTSSVNVSDWGLVDEHDEGGGQS

Nucleotide

• Length: 1173 bp

>NTDB_id=1040979 ABRP31_RS15935 WP_087263936.1 3477679..3478851(-) (pilU) [Pseudomonas caspiana strain WHRI 7043]
ATGGATTTCCCGGCGTTGTTGAAGATTCTGGCCAGCCAGGATGGATCGGACCTTTATCTTTCTACGGGAGCGCCGCCCTG
CGCCAAGTTCAATGGCGTGCTCAAACCATTGGGTACAGAGTCCCTGAAGCCGGGCCAGGTCGCGCTGGTCGCCGACGGGC
TGATGGATGCAGAGCAGAAACTGGAATTCCATCGCGAACTGGAAATGAACCTTGCGGTGTCCATGGCCGGGATCGGTCGT
TTCCGGATCAACATCTTCATGCAGCGCAACGAGGTTTCTATCGTGGCGCGCAACATCAAGCTGGATATCCCGCGCTTCGA
GGACCTGCACCTGCCGCCGGTGCTGCTCGACGTGATCATGGAAAAGCATGGCCTGGTGCTGTTTGTGGGCGCGACCGGTT
CAGGTAAGTCCACTTCGCTGGCGGCGCTGATCGATCACCGTAACCGCAATGCCAGTGGGCACATCATCACCATTGAAGAC
CCTGTGGAATTCATTCACCGGCACAAGAAGTCGATCATCAACCAGCGTGAAGTCGGGGTTGATACCCGTAGCTTTCGCGC
GGCGCTGAAAAACACCCTGCGTCAGGCACCGGATGTCATTCTGATCGGCGAAATCCGTGATCGGGAAACCATGGAGCACG
CTTTGGCTTTCGCCGACACCGGGCACTTGTGCCTTTCGACCCTGCACGCCAACAACGCCAATCAGGCGCTGGACCGGATC
ATCAACTTTTTCCCGGAGGAGCGGCGTCAGCAGTTGCTGCAGGATCTGGGTAATAATCTTAAAGCGTTTGTTTCCCAGCG
ACTGGTCAAGACCGTTGACGGTAAGCGCAGGGCGGCAGTGGAAGTCATGATGGGCACGCCGACCATACGCGACCTTATCC
AGCGCAACGAGTTGACTGAACTCAAAGGCATCATGGAAAAGTCCGGCAACCTGGGCATGCAGACCTTCGACGGCGCGCTG
TTCGATTTGGCCGCCGCCGGTGTGATCAGCGAAGAAGAAGCGCTCAAATACGCCGACTCCCAGAACAACGTGCGCCTGCG
CCTCAAGCTGCATGGTGAAGGCGTGACGGCCAACCCTACTGCTGCGCCAAGCGCTCCTGTCGGTACCTCCAGCGTGAACG
TGTCGGACTGGGGATTGGTGGATGAGCACGATGAGGGTGGCGGGCAGAGTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-248)

3D structure

• AlphaFold DB: A0A1Y3P700

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	57.345	90.769	0.521
pilU	Acinetobacter baylyi ADP1	53.371	91.282	0.487
pilU	Vibrio cholerae strain A1552	50.857	89.744	0.456
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.153	96.923	0.379
pilT	Pseudomonas stutzeri DSM 10701	41.57	88.205	0.367
pilT	Pseudomonas aeruginosa PAK	41.57	88.205	0.367