Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   ACCQ15_RS15695 Genome accession   NZ_CP167856
Coordinates   3637090..3637503 (-) Length   137 a.a.
NCBI ID   WP_005921365.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1754     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632090..3642503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ15_RS15680 (ACCQ15_15680) pilR 3632429..3633883 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ15_RS15690 (ACCQ15_15690) pilB 3635312..3637048 (-) 1737 WP_338339029.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ15_RS15695 (ACCQ15_15695) pilA2 3637090..3637503 (-) 414 WP_005921365.1 pilin Machinery gene
  ACCQ15_RS15700 (ACCQ15_15700) comP 3637600..3638028 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCQ15_RS15705 (ACCQ15_15705) - 3638373..3639649 (+) 1277 Protein_3065 type II secretion system F family protein -
  ACCQ15_RS15710 (ACCQ15_15710) - 3639656..3640519 (+) 864 WP_338339028.1 A24 family peptidase -
  ACCQ15_RS15715 (ACCQ15_15715) coaE 3640533..3641144 (+) 612 WP_109290722.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14164.27 Da        Isoelectric Point: 8.1169

>NTDB_id=1039903 ACCQ15_RS15695 WP_005921365.1 3637090..3637503(-) (pilA2) [Xanthomonas sp. NCPPB 1754]
MSRVNGFTLLELMIVVAIVGILSALALPAYQSYVIKARVTEAIILADSAKAAVTQNVNNENALTTTACAGVSGLSSPTKN
VASFTCQGAGVLTVVTTNVAGSVTLSLVPSYNSDRPVIWTCRHVSGSASYVPSDCRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1039903 ACCQ15_RS15695 WP_005921365.1 3637090..3637503(-) (pilA2) [Xanthomonas sp. NCPPB 1754]
ATGAGCCGGGTAAACGGTTTCACCTTGCTCGAGCTAATGATCGTCGTGGCCATCGTCGGGATATTGTCTGCATTGGCCCT
GCCGGCTTATCAAAGTTATGTAATCAAGGCGCGCGTGACCGAAGCTATTATTTTGGCTGACTCTGCCAAAGCTGCGGTGA
CTCAGAATGTCAATAATGAAAATGCTTTGACAACTACTGCATGTGCGGGGGTGAGCGGGCTGTCGTCTCCCACTAAAAAT
GTAGCGTCTTTCACGTGCCAGGGCGCAGGAGTGCTGACTGTCGTTACGACCAACGTTGCAGGCTCGGTAACTCTGTCACT
TGTACCCAGCTACAACTCGGATCGTCCGGTAATCTGGACTTGCCGACATGTTTCTGGATCGGCTAGTTACGTGCCTTCAG
ATTGCCGAAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

49.265

99.27

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

41.875

100

0.489
  pilA2 Legionella pneumophila strain ERS1305867

48.529

99.27

0.482
  comP Acinetobacter baylyi ADP1

41.611

100

0.453

Multiple sequence alignment