Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | ACCQ15_RS15700 | Genome accession | NZ_CP167856 |
| Coordinates | 3637600..3638028 (-) | Length | 142 a.a. |
| NCBI ID | WP_005921364.1 | Uniprot ID | - |
| Organism | Xanthomonas sp. NCPPB 1754 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3632600..3643028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCQ15_RS15690 (ACCQ15_15690) | pilB | 3635312..3637048 (-) | 1737 | WP_338339029.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCQ15_RS15695 (ACCQ15_15695) | pilA2 | 3637090..3637503 (-) | 414 | WP_005921365.1 | pilin | Machinery gene |
| ACCQ15_RS15700 (ACCQ15_15700) | comP | 3637600..3638028 (-) | 429 | WP_005921364.1 | pilin | Machinery gene |
| ACCQ15_RS15705 (ACCQ15_15705) | - | 3638373..3639649 (+) | 1277 | Protein_3065 | type II secretion system F family protein | - |
| ACCQ15_RS15710 (ACCQ15_15710) | - | 3639656..3640519 (+) | 864 | WP_338339028.1 | A24 family peptidase | - |
| ACCQ15_RS15715 (ACCQ15_15715) | coaE | 3640533..3641144 (+) | 612 | WP_109290722.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14513.65 Da Isoelectric Point: 8.4798
>NTDB_id=1039904 ACCQ15_RS15700 WP_005921364.1 3637600..3638028(-) (comP) [Xanthomonas sp. NCPPB 1754]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR
Nucleotide
Download Length: 429 bp
>NTDB_id=1039904 ACCQ15_RS15700 WP_005921364.1 3637600..3638028(-) (comP) [Xanthomonas sp. NCPPB 1754]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
54.305 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
55.319 |
99.296 |
0.549 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.61 |
99.296 |
0.542 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.463 |
100 |
0.479 |
| pilA | Pseudomonas aeruginosa PAK |
37.58 |
100 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.411 |
100 |
0.408 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
34.94 |
100 |
0.408 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.278 |
100 |
0.408 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.559 |
100 |
0.408 |
| pilA | Haemophilus influenzae 86-028NP |
38.971 |
95.775 |
0.373 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.31 |
90.845 |
0.366 |