Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ15_RS15680 Genome accession   NZ_CP167856
Coordinates   3632429..3633883 (+) Length   484 a.a.
NCBI ID   WP_011348337.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1754     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627429..3638883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ15_RS15660 (ACCQ15_15660) - 3627721..3628065 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACCQ15_RS15665 (ACCQ15_15665) sucD 3628236..3629111 (-) 876 WP_372380790.1 succinate--CoA ligase subunit alpha -
  ACCQ15_RS15670 (ACCQ15_15670) sucC 3629136..3630305 (-) 1170 WP_372380791.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ15_RS15675 (ACCQ15_15675) - 3630537..3632150 (+) 1614 WP_277573647.1 PAS domain-containing sensor histidine kinase -
  ACCQ15_RS15680 (ACCQ15_15680) pilR 3632429..3633883 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ15_RS15690 (ACCQ15_15690) pilB 3635312..3637048 (-) 1737 WP_338339029.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ15_RS15695 (ACCQ15_15695) pilA2 3637090..3637503 (-) 414 WP_005921365.1 pilin Machinery gene
  ACCQ15_RS15700 (ACCQ15_15700) comP 3637600..3638028 (-) 429 WP_005921364.1 pilin Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52491.26 Da        Isoelectric Point: 6.8289

>NTDB_id=1039901 ACCQ15_RS15680 WP_011348337.1 3632429..3633883(+) (pilR) [Xanthomonas sp. NCPPB 1754]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039901 ACCQ15_RS15680 WP_011348337.1 3632429..3633883(+) (pilR) [Xanthomonas sp. NCPPB 1754]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGCGCCGCGGCCGAGCCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCACTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment