Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACDI99_RS00775 Genome accession   NZ_CP167783
Coordinates   166233..167717 (-) Length   494 a.a.
NCBI ID   WP_034675882.1    Uniprot ID   A0A8H2K1S5
Organism   Acinetobacter radioresistens strain E3263934     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 161233..172717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI99_RS00750 (ACDI99_00750) - 161941..162321 (-) 381 WP_034675877.1 hypothetical protein -
  ACDI99_RS00755 (ACDI99_00755) - 162430..162828 (+) 399 WP_005022923.1 MAPEG family protein -
  ACDI99_RS00760 (ACDI99_00760) ppa 162947..163483 (+) 537 WP_005017195.1 inorganic diphosphatase -
  ACDI99_RS00765 (ACDI99_00765) - 163580..164848 (-) 1269 WP_034680201.1 OprD family outer membrane porin -
  ACDI99_RS00770 (ACDI99_00770) - 165411..166178 (+) 768 WP_005405856.1 TorF family putative porin -
  ACDI99_RS00775 (ACDI99_00775) comM 166233..167717 (-) 1485 WP_034675882.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACDI99_RS00780 (ACDI99_00780) - 167781..168008 (-) 228 WP_034675884.1 accessory factor UbiK family protein -
  ACDI99_RS00785 (ACDI99_00785) glnK 168278..168616 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  ACDI99_RS00790 (ACDI99_00790) - 168675..170057 (+) 1383 WP_034675886.1 ammonium transporter -
  ACDI99_RS00795 (ACDI99_00795) nrdR 170179..170631 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  ACDI99_RS00800 (ACDI99_00800) ribD 170650..171738 (+) 1089 WP_005022938.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54296.60 Da        Isoelectric Point: 8.6572

>NTDB_id=1039342 ACDI99_RS00775 WP_034675882.1 166233..167717(-) (comM) [Acinetobacter radioresistens strain E3263934]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVRHQLILAEANAMEAAQLPDFQVYGAQHL
KQVCQHLLQQQPLLPVKRKLSEAAQDYKLDLADIKGQLRPRRALEIAAAGSHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLIAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQGCLNQLLSPKQLELHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKEIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1039342 ACDI99_RS00775 WP_034675882.1 166233..167717(-) (comM) [Acinetobacter radioresistens strain E3263934]
ATGTCTTTTGCCAAAATTTATACCCGGGGGGTGCTGGGGCTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCTTCCCTGACTATTGTAGGGCTTCCTGAAGCCGCAGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGCGGCTTTCAGTTTCCCACCAAACGCCTTACTATTAACCTGGCTCCTGCCGATTTGCCCAAAGATGGTTCACGT
CTAGATCTACCGATTGCCTTGGGAATCTTGGTTGCTTCAGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTCTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCATGTCAAAAAGTACGGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCCCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATCTACTACAGCAACAGCCATTATTACCGGTTAAAAGGAAACTATCTGAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGACAACTGCGCCCACGGCGTGCTCTGGAAATTGCAGCAGCAGGCAGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCTAAGCCTGGTGAAATCACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAAGTTTTACGTCAGCCACTCGAGTCTAAGGAA
ATTGTTATTTCTCGGGCCTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGATAGCCGCTATGAATCCTTGTCCATG
TGGTTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCCGATGCAATCAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACCGGATTGATCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACCACACCTGCTGAG
AATTCAGACACAGTCAGGAAACGTGTCATTTTAGCTTATGAACAACAGCTCCAACGCCAGGGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCGAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCTGCCCGTGCTTATCATCGGGTTTTACGTGTAGCCAGAACAATTGCTGATCTGGCACTTTCCAAAGAAATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52

100

0.526
  comM Vibrio campbellii strain DS40M4

51.4

100

0.52
  comM Glaesserella parasuis strain SC1401

51.195

100

0.52
  comM Vibrio cholerae strain A1552

51.21

100

0.514
  comM Legionella pneumophila str. Paris

50.403

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.474

Multiple sequence alignment