Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACB088_RS17810 Genome accession   NZ_CP167121
Coordinates   3763788..3764540 (+) Length   250 a.a.
NCBI ID   WP_375037605.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3758788..3769540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS17795 (ACB088_17795) ponA 3759369..3761930 (-) 2562 WP_133747411.1 penicillin-binding protein PBP1a -
  ACB088_RS17800 (ACB088_17800) pilM 3762092..3763150 (+) 1059 WP_199989399.1 pilus assembly protein PilM Machinery gene
  ACB088_RS17805 (ACB088_17805) pilN 3763150..3763791 (+) 642 WP_017390950.1 PilN domain-containing protein Machinery gene
  ACB088_RS17810 (ACB088_17810) pilO 3763788..3764540 (+) 753 WP_375037605.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACB088_RS17815 (ACB088_17815) pilP 3764551..3765078 (+) 528 WP_045433419.1 pilus assembly protein PilP Machinery gene
  ACB088_RS17820 (ACB088_17820) pilQ 3765141..3767294 (+) 2154 WP_375037606.1 type IV pilus secretin PilQ Machinery gene
  ACB088_RS17825 (ACB088_17825) aroK 3767306..3767875 (+) 570 WP_003653807.1 shikimate kinase AroK -
  ACB088_RS17830 (ACB088_17830) aroB 3767904..3768986 (+) 1083 WP_003653806.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28219.07 Da        Isoelectric Point: 4.8667

>NTDB_id=1038308 ACB088_RS17810 WP_375037605.1 3763788..3764540(+) (pilO) [Acinetobacter sp. RW6]
MSPDELHELSLEQAPSKKKKITIEKFLQQFNTLDMNSYGSWPLSVKITCWVFIFFAVLALGYFVVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITMEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVNKDSKSDIPVLNYSIKAKTYRYMGAVENAEHPENNASASVAP
VSSTANTQSK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1038308 ACB088_RS17810 WP_375037605.1 3763788..3764540(+) (pilO) [Acinetobacter sp. RW6]
ATGAGTCCGGATGAACTTCATGAGTTGTCGTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCATAGAAAAATTTCT
TCAGCAATTTAACACACTAGATATGAACAGCTATGGTAGCTGGCCATTATCTGTGAAAATTACTTGCTGGGTTTTTATTT
TCTTTGCTGTGTTGGCTTTGGGATATTTTGTTGTTATTCAGCCAAAGCTACAAGCAATTGATAATGCACAGGCACAAGAA
AGTAATTTGTTGAATGAGTTTCGAGAAAAAGATTCAAAATTGCGTAACTTGCAGCAATATCAGCTTCAACTTCAAGAGAT
GCAAGCAAACTTTAATCAGCAGTTAGAGCAACTGCCAAAAGAAACCGAAATTCCAAGTTTGGTTGAAGATATTAATTTAA
CTGGGGTGAATTCTGGCCTGAAGTTTAAAAATATCCGTTTAGAAGATGAAGTGAAACAAGAAATCTTTATTGAACAGCCT
ATTACGATGGAAGCAACCGGCGATTATCACGCTTTTGGTGCTTTTGTCAGTAGTATTGCGGCATTACCACGTATTGTGAC
AATGCATGACTTTGTTGTAGAAGCTGCACCTGTTAATAAAGATAGTAAGTCAGATATTCCTGTACTTAATTATTCTATTA
AAGCAAAAACTTATCGCTATATGGGCGCTGTAGAAAATGCTGAACATCCGGAAAACAACGCTTCGGCTTCAGTAGCACCT
GTTTCCTCTACTGCTAATACACAGTCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

82

100

0.82
  comO Acinetobacter baylyi ADP1

68.675

99.6

0.684

Multiple sequence alignment