Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACB088_RS17805 Genome accession   NZ_CP167121
Coordinates   3763150..3763791 (+) Length   213 a.a.
NCBI ID   WP_017390950.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3758150..3768791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS17785 (ACB088_17785) - 3758156..3758488 (+) 333 WP_003653820.1 hypothetical protein -
  ACB088_RS17790 (ACB088_17790) - 3758491..3759315 (+) 825 WP_375037604.1 putative RNA methyltransferase -
  ACB088_RS17795 (ACB088_17795) ponA 3759369..3761930 (-) 2562 WP_133747411.1 penicillin-binding protein PBP1a -
  ACB088_RS17800 (ACB088_17800) pilM 3762092..3763150 (+) 1059 WP_199989399.1 pilus assembly protein PilM Machinery gene
  ACB088_RS17805 (ACB088_17805) pilN 3763150..3763791 (+) 642 WP_017390950.1 PilN domain-containing protein Machinery gene
  ACB088_RS17810 (ACB088_17810) pilO 3763788..3764540 (+) 753 WP_375037605.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACB088_RS17815 (ACB088_17815) pilP 3764551..3765078 (+) 528 WP_045433419.1 pilus assembly protein PilP Machinery gene
  ACB088_RS17820 (ACB088_17820) pilQ 3765141..3767294 (+) 2154 WP_375037606.1 type IV pilus secretin PilQ Machinery gene
  ACB088_RS17825 (ACB088_17825) aroK 3767306..3767875 (+) 570 WP_003653807.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23947.31 Da        Isoelectric Point: 6.4518

>NTDB_id=1038307 ACB088_RS17805 WP_017390950.1 3763150..3763791(+) (pilN) [Acinetobacter sp. RW6]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVFSGWFYLNQKLNDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGVTTTDDTANTSVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1038307 ACB088_RS17805 WP_017390950.1 3763150..3763791(+) (pilN) [Acinetobacter sp. RW6]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAACAGCGCAAAAAACAATTTATTATTTTCTGTTTTGG
GGTAGTTGTTCTGGGGATCACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCTA
ATCAACTCATCACCAGTACAAACCAGAGTCTAGATCAACAACTTAAAACCTTAAATGGTCTGCAAGAACAGCGTGACGCT
ATTATCGAGCGTATGAAACTTATTCAGGGATTGCAAAGTCAGCGCCCTGTTGTTGTACGTTTGGTAGATGAATTGGTACG
TGTTACTCCTGCTGCGATGTATTTGACTAAATTTAGTCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTCGCAGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAACTCTTTCTTAGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTCGAGTGGAAGATAGCTATGGCAGTTTTGTTGTGACTGT
TGATTTGGGCGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTGTAAGTACGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

73.529

95.775

0.704

Multiple sequence alignment