Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACB088_RS17815 Genome accession   NZ_CP167121
Coordinates   3764551..3765078 (+) Length   175 a.a.
NCBI ID   WP_045433419.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3759551..3770078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS17800 (ACB088_17800) pilM 3762092..3763150 (+) 1059 WP_199989399.1 pilus assembly protein PilM Machinery gene
  ACB088_RS17805 (ACB088_17805) pilN 3763150..3763791 (+) 642 WP_017390950.1 PilN domain-containing protein Machinery gene
  ACB088_RS17810 (ACB088_17810) pilO 3763788..3764540 (+) 753 WP_375037605.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACB088_RS17815 (ACB088_17815) pilP 3764551..3765078 (+) 528 WP_045433419.1 pilus assembly protein PilP Machinery gene
  ACB088_RS17820 (ACB088_17820) pilQ 3765141..3767294 (+) 2154 WP_375037606.1 type IV pilus secretin PilQ Machinery gene
  ACB088_RS17825 (ACB088_17825) aroK 3767306..3767875 (+) 570 WP_003653807.1 shikimate kinase AroK -
  ACB088_RS17830 (ACB088_17830) aroB 3767904..3768986 (+) 1083 WP_003653806.1 3-dehydroquinate synthase -
  ACB088_RS17835 (ACB088_17835) - 3769003..3769884 (+) 882 WP_375037607.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19341.39 Da        Isoelectric Point: 9.0270

>NTDB_id=1038309 ACB088_RS17815 WP_045433419.1 3764551..3765078(+) (pilP) [Acinetobacter sp. RW6]
MKLKQISFSILACLVLVGCDSRIDAVNQQMADIRNQPPQQIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1038309 ACB088_RS17815 WP_045433419.1 3764551..3765078(+) (pilP) [Acinetobacter sp. RW6]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTCGGATGTGACTCGAGAATTGACGCTGTAAA
TCAGCAAATGGCAGATATACGTAACCAGCCACCACAGCAGATAGATCCAGCACCTGTTTTCACACCTGTGCCACAGTTTA
ATTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCTCTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGG
GTATATCCGAATTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAATATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTACTGGCTCTTATCCAATCACCTGATCAGCAAATTGAGCGAGTGCAGGTGGGGAACTATATCG
GGATGAATCAAGGGCGTATTACCCATATTGGTCCAACCCAGATTGATCTGGTAGAAATTGTCCCCGATGGGCGCGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.143

100

0.891
  comL Acinetobacter baylyi ADP1

70.76

97.714

0.691

Multiple sequence alignment