Detailed information NTG1038285

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACB088_RS11890
• Genome accession: NZ_CP167121
• Coordinates: 2517150..2518268 (+)
• Length: 372 a.a.
• NCBI ID: WP_375037073.1
• Uniprot ID: -
• Organism: Acinetobacter sp. RW6
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2512150..2523268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACB088_RS11880 (ACB088_11880)	-	2515274..2515966 (-)	693	WP_375037072.1	YggS family pyridoxal phosphate-dependent enzyme	-
ACB088_RS11885 (ACB088_11885)	pilT	2516093..2517130 (+)	1038	WP_003653239.1	type IV pilus twitching motility protein PilT	Machinery gene
ACB088_RS11890 (ACB088_11890)	pilU	2517150..2518268 (+)	1119	WP_375037073.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACB088_RS11895 (ACB088_11895)	fur	2518338..2518775 (-)	438	WP_003653242.1	ferric iron uptake transcriptional regulator	-
ACB088_RS11900 (ACB088_11900)	-	2518887..2519285 (+)	399	WP_003653245.1	outer membrane protein assembly factor BamE	-
ACB088_RS11905 (ACB088_11905)	-	2519353..2519664 (-)	312	WP_375037074.1	RnfH family protein	-
ACB088_RS11910 (ACB088_11910)	-	2519664..2520731 (-)	1068	WP_375037075.1	hypothetical protein	-
ACB088_RS11915 (ACB088_11915)	-	2520884..2521339 (-)	456	WP_375037076.1	bacteriohemerythrin	-
ACB088_RS11920 (ACB088_11920)	-	2521591..2522439 (-)	849	WP_199990298.1	class II glutamine amidotransferase	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41887.10 Da
• Isoelectric Point: 6.6400

>NTDB_id=1038285 ACB088_RS11890 WP_375037073.1 2517150..2518268(+) (pilU) [Acinetobacter sp. RW6]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIIPISKNSLSGDVIGQLLHSIMSEKQRKEFADTRECNFAIMNRDKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISYRNHNTKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLAEEGPDQIAGTNQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=1038285 ACB088_RS11890 WP_375037073.1 2517150..2518268(+) (pilU) [Acinetobacter sp. RW6]
ATGGATTTTAATGACCTACTCAACCTTATGGTTGAAAAAAAATCATCCGATCTTTTTATTACAGATGGTGTTGCACCATC
TATGAAAATTAACGGGCAAATTATTCCAATTTCAAAAAATAGTCTTTCTGGGGACGTTATTGGTCAGCTTTTACATTCCA
TCATGAGTGAAAAACAGCGCAAAGAATTTGCAGACACTCGTGAATGTAACTTTGCCATTATGAACCGTGATAAAACGGCC
CGCTTTCGTGTGAGCGCTTTTCAGCAGCGTGACATGCCAGGTATGGTCTTACGTCGAATTGAAACTAAAATTCCTTCAAT
TGATGACTTGCAGTTACCACCAGTTCTTAAAGATTTATCGATGACCAAACGCGGTATCATTATTTTTGTTGGTGCAACAG
GTACAGGTAAATCGACGTCTTTGGCTTCAATGATTAGCTATCGTAACCACAACACTAAAGGTCATATCATTACCATTGAA
GACCCAATCGAGTTTATTCATGAACATGCAGGCTGCATCATTACCCAACGTGAAGTCGGGATCGATACAGACTCATTTGA
AATTGCCTTAAAGAATACTTTGCGACAAGCACCAGATGTGATCTTGATTGGTGAGATTCGCTCTCGTGAAGTCATGGACT
ACGCAATTGGCTTCGCTGAAACGGGCCATCTTGTATTAGCCACGATGCACGCTAACAACGCCAACCAAGCGCTCGATCGT
ATTATTCACTTCTTTGAAAGTGATCGCCACAGTCAGCTTTACATGGACTTATCGCTTAACTTAAAGGCCATGATTGCGCA
GCAACTTATTCCAACACCAGATGGCAATTCACGTCGTGCAGCCATTGAGATTTTGATTAATTCGCCATTAATTTCAGATT
ACATTCGTAAAGGCGAAATTCATGAAATTAAAGATTTAATGAAGCGTTCGCGTGAACTCGGTATGCAAACCTTTGACCAA
GCGTTGTTTGATCTCTATAAAGCAGGCCAAATTACCTATAAAGATGCATTAAAACATGCCGACTCACCAAACGATTTGCG
TTTGACCATTAAGCTTGCCGAAGAAGGACCTGATCAAATTGCAGGCACAAATCAGCATTTAACCTTCGACCGACAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (42-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.132	100	0.763
pilU	Pseudomonas stutzeri DSM 10701	67.655	99.731	0.675
pilU	Vibrio cholerae strain A1552	54.054	99.462	0.538
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.659	97.849	0.398
pilT	Legionella pneumophila strain Lp02	39.645	90.86	0.36
pilT	Legionella pneumophila strain ERS1305867	39.645	90.86	0.36