Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   ACA346_RS00380 Genome accession   NZ_CP166970
Coordinates   65226..66128 (+) Length   300 a.a.
NCBI ID   WP_277837249.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 60226..71128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS00350 (ACA346_00350) - 60514..61260 (-) 747 WP_217374488.1 amino acid ABC transporter ATP-binding protein -
  ACA346_RS00355 (ACA346_00355) - 61265..61942 (-) 678 WP_024392848.1 amino acid ABC transporter permease -
  ACA346_RS00360 (ACA346_00360) - 61923..62582 (-) 660 WP_277844343.1 amino acid ABC transporter permease -
  ACA346_RS00365 (ACA346_00365) ruvB 62710..63708 (+) 999 WP_130555556.1 Holliday junction branch migration DNA helicase RuvB -
  ACA346_RS00370 (ACA346_00370) - 63708..64454 (+) 747 WP_418126905.1 GNAT family N-acetyltransferase -
  ACA346_RS00375 (ACA346_00375) - 64456..65070 (+) 615 WP_418126906.1 HAD-IA family hydrolase -
  ACA346_RS00380 (ACA346_00380) comR 65226..66128 (+) 903 WP_277837249.1 transcriptional regulator Regulator
  ACA346_RS00385 (ACA346_00385) - 66336..67556 (+) 1221 WP_418126907.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACA346_RS00390 (ACA346_00390) - 67740..69260 (+) 1521 WP_418126908.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35893.83 Da        Isoelectric Point: 4.6406

>NTDB_id=1036411 ACA346_RS00380 WP_277837249.1 65226..66128(+) (comR) [Streptococcus parasuis strain NX1]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRDQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRNRDTDATIYHYFSSLVTHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1036411 ACA346_RS00380 WP_277837249.1 65226..66128(+) (comR) [Streptococcus parasuis strain NX1]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCGATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCGACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAAATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TGTTACCCATCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGGGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACCGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis 05ZYH33

62.207

99.667

0.62
  comR Streptococcus suis P1/7

62.207

99.667

0.62
  comR Streptococcus suis D9

56.811

100

0.57
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.869

96.333

0.403
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39
  comR Streptococcus pyogenes MGAS315

36.213

100

0.363

Multiple sequence alignment