Detailed information NTG1036409

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LQ158_RS21930
• Genome accession: NZ_OW849377
• Coordinates: 4564241..4565266 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate 162
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4559241..4570266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ158_RS21920 (AI2703V1_4206)	rpmE	4561472..4561684 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LQ158_RS21925 (AI2703V1_4207)	priA	4561887..4564085 (+)	2199	WP_001298972.1	primosomal protein N'	Machinery gene
LQ158_RS21930 (AI2703V1_4208)	cytR	4564241..4565266 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LQ158_RS21935 (AI2703V1_4209)	ftsN	4565358..4566317 (+)	960	WP_000068834.1	cell division protein FtsN	-
LQ158_RS21940 (AI2703V1_4210)	hslV	4566410..4566940 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LQ158_RS21945 (AI2703V1_4211)	hslU	4566950..4568281 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
LQ158_RS21950 (AI2703V1_4212)	menA	4568348..4569274 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LQ158_RS21955 (AI2703V1_4213)	rraA	4569367..4569852 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LQ158_RS21960 (AI2703V1_4214)	zapB	4569937..4570182 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1036409 LQ158_RS21930 WP_000644904.1 4564241..4565266(+) (cytR) [Escherichia coli isolate 162]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1036409 LQ158_RS21930 WP_000644904.1 4564241..4565266(+) (cytR) [Escherichia coli isolate 162]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628