Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   AB9R84_RS04985 Genome accession   NZ_CP166304
Coordinates   1026328..1026621 (-) Length   97 a.a.
NCBI ID   WP_418139755.1    Uniprot ID   -
Organism   Oceanimonas smirnovii strain OS2020-133     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1021328..1031621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9R84_RS04950 (AB9R84_04950) - 1021747..1022061 (+) 315 WP_019935584.1 DUF883 family protein -
  AB9R84_RS04955 (AB9R84_04955) - 1022066..1022458 (+) 393 WP_317075325.1 phage holin family protein -
  AB9R84_RS04960 (AB9R84_04960) - 1022468..1022707 (+) 240 WP_317075326.1 hypothetical protein -
  AB9R84_RS04965 (AB9R84_04965) - 1022704..1023552 (-) 849 WP_346352176.1 DnaA ATPase domain-containing protein -
  AB9R84_RS04970 (AB9R84_04970) - 1023536..1024219 (-) 684 WP_019935588.1 DnaT-like ssDNA-binding domain-containing protein -
  AB9R84_RS04975 (AB9R84_04975) - 1024346..1025326 (+) 981 WP_395545587.1 response regulator -
  AB9R84_RS04980 (AB9R84_04980) galU 1025327..1026229 (-) 903 WP_019935590.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AB9R84_RS04985 (AB9R84_04985) comE1/comEA 1026328..1026621 (-) 294 WP_418139755.1 ComEA family DNA-binding protein Machinery gene
  AB9R84_RS04990 (AB9R84_04990) - 1026729..1027028 (-) 300 WP_317075330.1 YciI family protein -
  AB9R84_RS04995 (AB9R84_04995) - 1027050..1027589 (-) 540 WP_317075331.1 septation protein A -
  AB9R84_RS05000 (AB9R84_05000) - 1027669..1028418 (-) 750 WP_317075332.1 M15 family metallopeptidase -
  AB9R84_RS05005 (AB9R84_05005) - 1028415..1029701 (-) 1287 WP_418139756.1 TRAP transporter large permease -
  AB9R84_RS05010 (AB9R84_05010) - 1029698..1030147 (-) 450 WP_228211848.1 TRAP transporter small permease -
  AB9R84_RS05015 (AB9R84_05015) dctP 1030226..1031257 (-) 1032 WP_317075334.1 TRAP transporter substrate-binding protein DctP -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10285.68 Da        Isoelectric Point: 4.9861

>NTDB_id=1034131 AB9R84_RS04985 WP_418139755.1 1026328..1026621(-) (comE1/comEA) [Oceanimonas smirnovii strain OS2020-133]
MKKLLTPVLLSLLIATGAPAFANEENAEAQSAVVTSININTANADQLAQLSGIGPAKADAIVQYRNENGPFKSVDDLMQV
RGIGEATVEKNRHLLNN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1034131 AB9R84_RS04985 WP_418139755.1 1026328..1026621(-) (comE1/comEA) [Oceanimonas smirnovii strain OS2020-133]
ATGAAAAAACTGCTTACCCCTGTTTTGCTGTCATTGCTGATAGCCACCGGTGCACCGGCGTTTGCCAACGAGGAAAACGC
AGAAGCACAAAGTGCAGTGGTTACCAGCATTAACATCAATACTGCCAATGCCGATCAACTGGCCCAATTGTCTGGTATCG
GGCCGGCAAAGGCAGATGCCATCGTGCAGTATCGGAATGAAAACGGTCCCTTTAAATCCGTTGACGATCTGATGCAGGTA
AGGGGGATTGGTGAGGCAACGGTAGAAAAAAACCGTCACTTGCTAAACAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

42.727

100

0.485
  comEA Vibrio cholerae C6706

47.917

98.969

0.474
  comEA Vibrio cholerae strain A1552

47.917

98.969

0.474
  comEA Vibrio campbellii strain DS40M4

45.652

94.845

0.433
  comEA Vibrio parahaemolyticus RIMD 2210633

45.882

87.629

0.402
  comEA Legionella pneumophila str. Paris

37.374

100

0.381
  comEA Legionella pneumophila strain ERS1305867

37.374

100

0.381

Multiple sequence alignment