Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AB8808_RS16395 Genome accession   NZ_CP166101
Coordinates   3866780..3867136 (+) Length   118 a.a.
NCBI ID   WP_081916779.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2632     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3861780..3872136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8808_RS16365 (AB8808_16355) - 3862160..3863086 (-) 927 WP_369927323.1 aspartate carbamoyltransferase catalytic subunit -
  AB8808_RS16370 (AB8808_16360) ruvX 3863132..3863551 (-) 420 WP_369927325.1 Holliday junction resolvase RuvX -
  AB8808_RS16375 (AB8808_16365) - 3863565..3864131 (-) 567 WP_369927327.1 YqgE/AlgH family protein -
  AB8808_RS16380 (AB8808_16370) - 3864259..3864546 (+) 288 WP_369927329.1 hypothetical protein -
  AB8808_RS16385 (AB8808_16375) - 3864678..3865538 (-) 861 WP_369927331.1 TonB family protein -
  AB8808_RS16390 (AB8808_16380) gshB 3865535..3866479 (-) 945 WP_369927333.1 glutathione synthase -
  AB8808_RS16395 (AB8808_16385) pilG 3866780..3867136 (+) 357 WP_081916779.1 twitching motility response regulator PilG Regulator
  AB8808_RS16400 (AB8808_16390) - 3867173..3867547 (+) 375 WP_369927335.1 response regulator -
  AB8808_RS16405 (AB8808_16395) - 3867555..3868100 (+) 546 WP_369927336.1 chemotaxis protein CheW -
  AB8808_RS16410 (AB8808_16400) - 3868274..3870307 (+) 2034 WP_369927338.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13081.15 Da        Isoelectric Point: 8.4889

>NTDB_id=1033426 AB8808_RS16395 WP_081916779.1 3866780..3867136(+) (pilG) [Xanthomonas sp. NCPPB 2632]
MVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQKPNIIFVDIMMPRLDGYQTCALIKNNAQFRGTPVVMLSSK
DGLFDKARGRIVGADQYLTKPFTRDELLGAIHRYATAS

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1033426 AB8808_RS16395 WP_081916779.1 3866780..3867136(+) (pilG) [Xanthomonas sp. NCPPB 2632]
ATGGTCATCGACGATTCCAAAACCATCCGGCGCACGGCGGAAACGCTGCTGAAGAAGGAAGGCTGCGACGTACTCACCGC
TGTCGACGGTTTCGAGGCGCTGGCGAAGATCTCCGACCAGAAGCCCAACATCATCTTCGTCGACATCATGATGCCGCGCC
TGGACGGCTACCAGACCTGCGCCCTGATCAAGAACAACGCCCAGTTCCGGGGTACGCCGGTGGTGATGCTTTCCTCCAAG
GACGGTCTGTTCGACAAGGCGCGTGGCCGCATCGTGGGCGCCGACCAGTACCTCACCAAGCCTTTCACCCGCGACGAGCT
GCTCGGCGCGATTCACCGTTATGCGACGGCGAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.795

99.153

0.712
  vicR Streptococcus mutans UA159

42.342

94.068

0.398
  pilH Synechocystis sp. PCC 6803

39.823

95.763

0.381
  chiS Vibrio cholerae strain A1552

37.288

100

0.373
  micA Streptococcus pneumoniae Cp1015

40.187

90.678

0.364

Multiple sequence alignment