Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | AACH65_RS17315 | Genome accession | NZ_AP027937 |
| Coordinates | 3753843..3754163 (+) | Length | 106 a.a. |
| NCBI ID | WP_279503550.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain VA60 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3748843..3759163
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH65_RS17300 (VAWG004_34180) | yfbV | 3749281..3749721 (-) | 441 | WP_338710394.1 | terminus macrodomain insulation protein YfbV | - |
| AACH65_RS17305 (VAWG004_34190) | - | 3750026..3751228 (+) | 1203 | WP_005349210.1 | acetate kinase | - |
| AACH65_RS17310 (VAWG004_34200) | pta | 3751284..3753464 (+) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| AACH65_RS17315 (VAWG004_34210) | comE1/comEA | 3753843..3754163 (+) | 321 | WP_279503550.1 | ComEA family DNA-binding protein | Machinery gene |
| AACH65_RS17320 (VAWG004_34220) | galU | 3754260..3755171 (+) | 912 | WP_005339121.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AACH65_RS17325 (VAWG004_34230) | - | 3755385..3756782 (+) | 1398 | WP_040065012.1 | peptide MFS transporter | - |
| AACH65_RS17330 (VAWG004_34240) | - | 3756857..3757828 (-) | 972 | WP_005358239.1 | response regulator | - |
| AACH65_RS17335 (VAWG004_34250) | - | 3758069..3758767 (+) | 699 | WP_139405566.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11316.30 Da Isoelectric Point: 9.6564
>NTDB_id=102977 AACH65_RS17315 WP_279503550.1 3753843..3754163(+) (comE1/comEA) [Aeromonas veronii strain VA60]
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=102977 AACH65_RS17315 WP_279503550.1 3753843..3754163(+) (comE1/comEA) [Aeromonas veronii strain VA60]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGTTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGTTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
50.893 |
100 |
0.538 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.903 |
100 |
0.5 |
| comEA | Vibrio cholerae strain A1552 |
48.113 |
100 |
0.481 |
| comEA | Vibrio cholerae C6706 |
48.113 |
100 |
0.481 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.33 |
91.509 |
0.406 |
| comEA | Legionella pneumophila str. Paris |
40.404 |
93.396 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.404 |
93.396 |
0.377 |