Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB5B06_RS15095 Genome accession   NZ_CP163419
Coordinates   2251321..2252865 (-) Length   514 a.a.
NCBI ID   WP_416047499.1    Uniprot ID   -
Organism   Cupriavidus basilensis strain BL-MT-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2246321..2257865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5B06_RS15075 - 2248419..2248973 (-) 555 WP_416047495.1 TlpA disulfide reductase family protein -
  AB5B06_RS15080 - 2249097..2249600 (-) 504 WP_416047496.1 thioredoxin -
  AB5B06_RS15085 - 2249703..2250311 (+) 609 WP_416047497.1 hypothetical protein -
  AB5B06_RS15090 - 2250379..2251029 (+) 651 WP_416047498.1 LysE family transporter -
  AB5B06_RS15095 comM 2251321..2252865 (-) 1545 WP_416047499.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB5B06_RS15100 - 2252995..2253258 (-) 264 WP_043343307.1 accessory factor UbiK family protein -
  AB5B06_RS15105 - 2253637..2254446 (+) 810 WP_150989651.1 TorF family putative porin -
  AB5B06_RS15110 - 2254512..2254850 (+) 339 WP_006159494.1 P-II family nitrogen regulator -
  AB5B06_RS15115 - 2254882..2256423 (+) 1542 WP_416047500.1 ammonium transporter -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54832.67 Da        Isoelectric Point: 7.2512

>NTDB_id=1029601 AB5B06_RS15095 WP_416047499.1 2251321..2252865(-) (comM) [Cupriavidus basilensis strain BL-MT-10]
MSLALLRSRALTGLEAPLVSVEVHLANGLPAFNIVGLADTEVRESRERVRAAILNSQLEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPLDGLDASEFAGELSLSGELRPVRGALAMAMGLGRDNAARQAAGEGSARSFVVAAENAPEAALI
DGVTVYAARSLLEVCAHLGPLPADRLARAEPLVEIAGGDPAGPDMRDVRGQAQARRAMEIAAAGQHSALLVGPPGTGKSM
LAQRFASLLPPMTLDEALESAAVQSLTAAGFHPARWRERPYRSPHHTASAAALVGGGSNPRPGEISLAHQGVLFLDELPE
FDRKVLEVLREPLESGRVTISRAMRQADFPARFQFIAAMNPCPCGYQGHPSRPCRCTPDQVLRYQSRLSGPLLDRIDLQV
EVPAQDHQEMLDGPPGEPSADVRQRVLAARAVQQARQGKPNAALSGREIDEHCPLAPEAQALLRGAMAKLAWSARAYFRV
LKIARTIADLAGAEQLQPSHVGEAIQYRRALRTP

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=1029601 AB5B06_RS15095 WP_416047499.1 2251321..2252865(-) (comM) [Cupriavidus basilensis strain BL-MT-10]
ATGAGCCTCGCCCTCCTGCGCAGCCGGGCGCTGACCGGACTCGAGGCACCGCTGGTGTCGGTCGAGGTGCACCTGGCCAA
CGGCCTGCCCGCCTTCAATATCGTCGGGTTGGCCGATACCGAAGTGCGCGAGAGCCGCGAGCGGGTGCGCGCGGCGATCC
TCAACAGCCAGCTCGAGTTTCCCAGCCGGCGCATTACGGTAAATCTGGCGCCGGCCGACCTGCCCAAGGAGTCCGGGCGC
TTCGACCTGCCGATCGCGCTTGGCATCCTGGCCGCAAGCGGGCAAATCCCGCTGGATGGCCTGGATGCCAGCGAGTTCGC
CGGCGAGCTGTCGCTGTCCGGCGAATTGCGCCCCGTGCGCGGGGCACTGGCCATGGCCATGGGCCTGGGGCGCGACAACG
CGGCACGGCAAGCCGCTGGGGAAGGCTCGGCGCGCAGCTTCGTGGTGGCGGCGGAAAACGCGCCCGAGGCGGCCCTGATC
GACGGCGTCACGGTATATGCGGCGCGCTCCCTGCTGGAAGTCTGTGCTCACCTTGGCCCTCTGCCCGCGGACCGCCTGGC
ACGCGCGGAGCCGTTGGTGGAGATCGCCGGAGGCGACCCGGCCGGCCCGGACATGCGTGACGTGCGGGGACAGGCGCAAG
CGCGCCGCGCCATGGAGATCGCGGCGGCGGGCCAGCATTCGGCCCTGCTCGTCGGTCCGCCCGGCACCGGCAAATCCATG
CTGGCGCAGCGCTTTGCCAGCCTGTTGCCACCCATGACCCTGGACGAAGCACTGGAATCCGCCGCGGTGCAGAGCCTGAC
CGCCGCCGGCTTCCATCCCGCCCGCTGGCGTGAACGGCCCTACCGCTCGCCGCACCACACCGCGTCGGCGGCGGCGCTGG
TGGGCGGTGGCAGCAATCCCCGGCCAGGCGAGATCTCGCTGGCCCACCAAGGTGTGTTGTTCCTGGATGAGTTGCCTGAA
TTTGACCGCAAGGTGCTGGAAGTGCTGCGCGAACCCCTGGAATCCGGCCGCGTCACCATCTCGCGCGCCATGCGGCAAGC
CGACTTCCCGGCGCGCTTCCAGTTCATCGCCGCGATGAACCCCTGTCCTTGCGGCTATCAGGGGCACCCTTCCCGTCCTT
GCCGTTGCACGCCGGACCAGGTGCTGCGCTACCAGTCCAGGCTGTCGGGACCGTTGCTCGACCGGATCGACCTGCAGGTG
GAAGTGCCGGCGCAGGATCATCAGGAAATGCTCGACGGCCCGCCCGGAGAGCCCAGCGCCGACGTGCGCCAGCGGGTGCT
GGCCGCCCGGGCCGTGCAGCAGGCCCGGCAGGGCAAGCCCAATGCCGCCCTGTCCGGTCGCGAGATCGACGAACACTGCC
CGCTCGCGCCCGAGGCGCAGGCATTGCTGCGCGGCGCCATGGCCAAACTAGCCTGGTCGGCGCGCGCCTATTTCCGCGTA
TTGAAGATCGCCCGCACCATTGCCGACCTGGCGGGCGCCGAGCAATTGCAGCCGAGCCATGTGGGCGAGGCTATCCAGTA
CCGGCGCGCCTTGCGGACACCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.849

99.027

0.523
  comM Vibrio campbellii strain DS40M4

52.652

99.027

0.521
  comM Glaesserella parasuis strain SC1401

51.267

99.805

0.512
  comM Legionella pneumophila str. Paris

48.762

100

0.498
  comM Legionella pneumophila strain ERS1305867

48.762

100

0.498
  comM Haemophilus influenzae Rd KW20

49.612

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.078

100

0.442

Multiple sequence alignment