Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   AACH75_RS03660 Genome accession   NZ_AP027933
Coordinates   758599..758919 (-) Length   106 a.a.
NCBI ID   WP_338773802.1    Uniprot ID   -
Organism   Aeromonas veronii strain VA7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753599..763919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH75_RS03640 (VAWG002_07040) - 753995..754693 (-) 699 WP_338773800.1 DnaT-like ssDNA-binding domain-containing protein -
  AACH75_RS03645 (VAWG002_07050) - 754934..755905 (+) 972 WP_144713690.1 response regulator -
  AACH75_RS03650 (VAWG002_07060) - 755980..757377 (-) 1398 WP_005339123.1 peptide MFS transporter -
  AACH75_RS03655 (VAWG002_07070) galU 757591..758502 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AACH75_RS03660 (VAWG002_07080) comE1/comEA 758599..758919 (-) 321 WP_338773802.1 ComEA family DNA-binding protein Machinery gene
  AACH75_RS03665 (VAWG002_07090) pta 759297..761477 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  AACH75_RS03670 (VAWG002_07100) - 761533..762735 (-) 1203 WP_005349210.1 acetate kinase -
  AACH75_RS03675 (VAWG002_07110) yfbV 763040..763480 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11256.25 Da        Isoelectric Point: 9.6564

>NTDB_id=102908 AACH75_RS03660 WP_338773802.1 758599..758919(-) (comE1/comEA) [Aeromonas veronii strain VA7]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKQTTTAEVAKEAGKLNINTATIAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=102908 AACH75_RS03660 WP_338773802.1 758599..758919(-) (comE1/comEA) [Aeromonas veronii strain VA7]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAAGCCGGCAAGCTGAATATCAATACGGCCACCATTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCAGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368

Multiple sequence alignment