Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB4922_RS16375 Genome accession   NZ_CP162911
Coordinates   3159846..3160973 (-) Length   375 a.a.
NCBI ID   WP_368774677.1    Uniprot ID   A0AB39IX13
Organism   Bacillus aerius strain KW1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3154846..3165973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS16340 (AB4922_16340) flgL 3155029..3155940 (-) 912 WP_039169789.1 flagellar hook-associated protein FlgL -
  AB4922_RS16345 (AB4922_16345) flgK 3155949..3157469 (-) 1521 WP_368774673.1 flagellar hook-associated protein FlgK -
  AB4922_RS16350 (AB4922_16350) - 3157485..3157967 (-) 483 WP_368774674.1 flagellar protein FlgN -
  AB4922_RS16355 (AB4922_16355) flgM 3157986..3158249 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB4922_RS16360 (AB4922_16360) - 3158329..3158748 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AB4922_RS16365 (AB4922_16365) comFC 3158805..3159491 (-) 687 WP_368774675.1 ComF family protein Machinery gene
  AB4922_RS16370 (AB4922_16370) - 3159488..3159781 (-) 294 WP_368774676.1 late competence development ComFB family protein -
  AB4922_RS16375 (AB4922_16375) comFA 3159846..3160973 (-) 1128 WP_368774677.1 DEAD/DEAH box helicase Machinery gene
  AB4922_RS16380 (AB4922_16380) - 3161345..3162187 (-) 843 WP_060832692.1 DegV family protein -
  AB4922_RS16385 (AB4922_16385) degU 3162399..3163088 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB4922_RS16390 (AB4922_16390) degS 3163153..3164328 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  AB4922_RS16395 (AB4922_16395) - 3164550..3165218 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42687.65 Da        Isoelectric Point: 10.4270

>NTDB_id=1028052 AB4922_RS16375 WP_368774677.1 3159846..3160973(-) (comFA) [Bacillus aerius strain KW1]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGVNIAVLYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVARGQLEAIKIPLRFHPKPLPVPTFQWVGDWKKKLKRNRLPASAMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
TESALVQISGRAGRHPDSFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=1028052 AB4922_RS16375 WP_368774677.1 3159846..3160973(-) (comFA) [Bacillus aerius strain KW1]
ATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTATGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGACTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTGGAGCTCGAACCTCGAATGAGGAAGGCATTTCAAGGAGTGAA
TATAGCTGTACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAGGATGT
TGCTCGTGGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCCAAAACCGTTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTGCAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGGTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
ACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTCTTTTAACGGAGACGTGTACTTTTTTCA
TTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(236-335)

Type III restriction enzyme, res subunit (ResIII)

(32-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.216

98.667

0.555
  comFA/cflA Streptococcus pneumoniae Rx1

41.525

94.4

0.392
  comFA/cflA Streptococcus pneumoniae D39

41.525

94.4

0.392
  comFA/cflA Streptococcus pneumoniae R6

41.525

94.4

0.392
  comFA/cflA Streptococcus pneumoniae TIGR4

41.243

94.4

0.389
  comFA/cflA Streptococcus mitis NCTC 12261

40.96

94.4

0.387
  comFA Latilactobacillus sakei subsp. sakei 23K

38.587

98.133

0.379
  comFA/cflA Streptococcus mitis SK321

39.831

94.4

0.376
  comFA Lactococcus lactis subsp. cremoris KW2

37.705

97.6

0.368

Multiple sequence alignment