Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB4922_RS16385 Genome accession   NZ_CP162911
Coordinates   3162399..3163088 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus aerius strain KW1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3157399..3168088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS16350 (AB4922_16350) - 3157485..3157967 (-) 483 WP_368774674.1 flagellar protein FlgN -
  AB4922_RS16355 (AB4922_16355) flgM 3157986..3158249 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB4922_RS16360 (AB4922_16360) - 3158329..3158748 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AB4922_RS16365 (AB4922_16365) comFC 3158805..3159491 (-) 687 WP_368774675.1 ComF family protein Machinery gene
  AB4922_RS16370 (AB4922_16370) - 3159488..3159781 (-) 294 WP_368774676.1 late competence development ComFB family protein -
  AB4922_RS16375 (AB4922_16375) comFA 3159846..3160973 (-) 1128 WP_368774677.1 DEAD/DEAH box helicase Machinery gene
  AB4922_RS16380 (AB4922_16380) - 3161345..3162187 (-) 843 WP_060832692.1 DegV family protein -
  AB4922_RS16385 (AB4922_16385) degU 3162399..3163088 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB4922_RS16390 (AB4922_16390) degS 3163153..3164328 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  AB4922_RS16395 (AB4922_16395) - 3164550..3165218 (+) 669 WP_017357860.1 YigZ family protein -
  AB4922_RS16400 (AB4922_16400) - 3165203..3166294 (+) 1092 WP_135226381.1 LCP family protein -
  AB4922_RS16405 (AB4922_16405) - 3166331..3167398 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1028053 AB4922_RS16385 WP_008348273.1 3162399..3163088(-) (degU) [Bacillus aerius strain KW1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1028053 AB4922_RS16385 WP_008348273.1 3162399..3163088(-) (degU) [Bacillus aerius strain KW1]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACACGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment