Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB3456_RS06820 Genome accession   NZ_CP162632
Coordinates   1425466..1425783 (+) Length   105 a.a.
NCBI ID   WP_017724578.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420466..1430783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS06790 (AB3456_06790) - 1420818..1421015 (+) 198 WP_026113590.1 YqgQ family protein -
  AB3456_RS06795 (AB3456_06795) - 1421401..1422387 (+) 987 WP_017724583.1 glucokinase -
  AB3456_RS06800 (AB3456_06800) - 1422387..1422710 (+) 324 WP_029377188.1 MTH1187 family thiamine-binding protein -
  AB3456_RS06805 (AB3456_06805) - 1422712..1423335 (+) 624 WP_119604184.1 MBL fold metallo-hydrolase -
  AB3456_RS06810 (AB3456_06810) comGA 1423433..1424407 (+) 975 WP_119604185.1 competence type IV pilus ATPase ComGA Machinery gene
  AB3456_RS06815 (AB3456_06815) comGB 1424379..1425446 (+) 1068 WP_119604186.1 competence type IV pilus assembly protein ComGB -
  AB3456_RS06820 (AB3456_06820) comGC 1425466..1425783 (+) 318 WP_017724578.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3456_RS06825 (AB3456_06825) comGD 1425758..1426207 (+) 450 WP_368679799.1 competence type IV pilus minor pilin ComGD -
  AB3456_RS06830 (AB3456_06830) comGF 1426465..1426908 (+) 444 WP_119604246.1 competence type IV pilus minor pilin ComGF -
  AB3456_RS06835 (AB3456_06835) - 1427115..1427588 (+) 474 WP_051035296.1 shikimate kinase -
  AB3456_RS06840 (AB3456_06840) gcvT 1427775..1428866 (+) 1092 WP_107552363.1 glycine cleavage system aminomethyltransferase GcvT -
  AB3456_RS06845 (AB3456_06845) gcvPA 1428884..1430236 (+) 1353 WP_119604247.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11903.09 Da        Isoelectric Point: 9.4895

>NTDB_id=1027723 AB3456_RS06820 WP_017724578.1 1425466..1425783(+) (comGC) [Staphylococcus pseudoxylosus strain Hao 2022]
MKNFKYKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPNTMEELVNEG
YIKENQKRCKSGALISIHDGEAVAS

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1027723 AB3456_RS06820 WP_017724578.1 1425466..1425783(+) (comGC) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGAAAAATTTTAAATATAAGTTTAACAAAAAGGCATTCACACTCATTGAAATGCTATTAGTTTTACTAATAATAAGTTT
GTTATTAATATTAATTATACCTAATATAGCTAAACAATCCTCACACATACAAACTACTAGTTGTGAAGCACAGCTTAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGCTTGAAGTTCAATAAGAAGCCAAATACTATGGAAGAACTCGTTAACGAAGGT
TATATAAAAGAGAATCAAAAACGATGTAAATCAGGCGCATTAATATCTATTCATGATGGTGAAGCAGTTGCAAGCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

67.647

97.143

0.657
  comGC Staphylococcus aureus N315

67.647

97.143

0.657
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comGC/cglC Streptococcus pneumoniae R6

42.697

84.762

0.362
  comGC/cglC Streptococcus pneumoniae D39

42.697

84.762

0.362
  comGC/cglC Streptococcus pneumoniae TIGR4

42.697

84.762

0.362
  comGC/cglC Streptococcus pneumoniae Rx1

42.697

84.762

0.362
  comYC Streptococcus mutans UA140

49.351

73.333

0.362
  comYC Streptococcus mutans UA159

49.351

73.333

0.362

Multiple sequence alignment