Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   BJR96_RS01175 Genome accession   NZ_LT545678
Coordinates   202559..202930 (+) Length   123 a.a.
NCBI ID   WP_000601101.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate SA111     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 197559..207930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJR96_RS01140 (SA111_00214) - 197767..199227 (+) 1461 WP_000468685.1 IS1182-like element IS1563 family transposase -
  BJR96_RS01145 (SA111_00215) comGA 199273..200244 (+) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  BJR96_RS01150 (SA111_00216) comGB 200138..201181 (+) 1044 WP_261368811.1 competence type IV pilus assembly protein ComGB Machinery gene
  BJR96_RS01155 (SA111_00217) comGC/cglC 201178..201507 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  BJR96_RS01160 (SA111_00218) comGD 201482..201895 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  BJR96_RS01165 (SA111_00219) comGE 201867..202166 (+) 300 WP_001872488.1 competence type IV pilus minor pilin ComGE Machinery gene
  BJR96_RS01170 (SA111_00220) comGF 202120..202581 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  BJR96_RS01175 (SA111_00221) comGG 202559..202930 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG Machinery gene
  BJR96_RS01180 (SA111_00222) comGH 203045..204019 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  BJR96_RS01185 (SA111_00223) - 204051..205244 (+) 1194 WP_000047534.1 acetate kinase -
  BJR96_RS01190 - 205372..205564 (+) 193 Protein_180 helix-turn-helix transcriptional regulator -
  BJR96_RS01195 - 205543..205830 (+) 288 Protein_181 hypothetical protein -
  BJR96_RS01200 (SA111_00224) - 205854..207029 (-) 1176 WP_000191687.1 IS256-like element ISSag11 family transposase -
  BJR96_RS01205 (SA111_00225) - 207198..207863 (+) 666 WP_000008108.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13891.14 Da        Isoelectric Point: 10.0693

>NTDB_id=1027455 BJR96_RS01175 WP_000601101.1 202559..202930(+) (comGG) [Streptococcus agalactiae isolate SA111]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFIGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=1027455 BJR96_RS01175 WP_000601101.1 202559..202930(+) (comGG) [Streptococcus agalactiae isolate SA111]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTATAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366

Multiple sequence alignment