Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4Y39_RS18635 Genome accession   NZ_CP162607
Coordinates   4007387..4008754 (-) Length   455 a.a.
NCBI ID   WP_045187939.1    Uniprot ID   A0AB39JLW8
Organism   Pseudomonas sp. Hg7Tf     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4002387..4013754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y39_RS18615 (AB4Y39_18615) - 4002705..4002902 (-) 198 WP_028944033.1 YbdD/YjiX family protein -
  AB4Y39_RS18620 (AB4Y39_18620) - 4002921..4004987 (-) 2067 WP_045187945.1 carbon starvation CstA family protein -
  AB4Y39_RS18625 (AB4Y39_18625) - 4005170..4005535 (+) 366 WP_280042856.1 PilZ domain-containing protein -
  AB4Y39_RS18630 (AB4Y39_18630) - 4005797..4007317 (+) 1521 WP_045187941.1 nucleobase:cation symporter-2 family protein -
  AB4Y39_RS18635 (AB4Y39_18635) radA 4007387..4008754 (-) 1368 WP_045187939.1 DNA repair protein RadA Machinery gene
  AB4Y39_RS18640 (AB4Y39_18640) mscL 4008931..4009344 (+) 414 WP_280042858.1 large-conductance mechanosensitive channel protein MscL -
  AB4Y39_RS18645 (AB4Y39_18645) - 4009396..4010172 (-) 777 WP_045187936.1 ferredoxin--NADP reductase -
  AB4Y39_RS18650 (AB4Y39_18650) - 4010360..4011067 (+) 708 WP_045187934.1 autoinducer binding domain-containing protein -
  AB4Y39_RS18655 (AB4Y39_18655) - 4011155..4012279 (+) 1125 WP_045187932.1 methyltransferase -
  AB4Y39_RS18660 (AB4Y39_18660) - 4012601..4012756 (-) 156 WP_045187930.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48628.12 Da        Isoelectric Point: 6.8313

>NTDB_id=1027450 AB4Y39_RS18635 WP_045187939.1 4007387..4008754(-) (radA) [Pseudomonas sp. Hg7Tf]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVLESGAAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFTTASAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIEAIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIMSSLRNRPLDNGLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1027450 AB4Y39_RS18635 WP_045187939.1 4007387..4008754(-) (radA) [Pseudomonas sp. Hg7Tf]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCGAAATGGGCTGGGCAGTGCGGCGAGTG
CGGTGCCTGGAACACCCTGGTCGAGACCGTGCTGGAAAGTGGCGCAGCCGCAGCACCCAGCGGCCGTACGGGTTGGGCCG
GACAGCAGGCACAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAGATTCCGCGCTTTACCACCGCCAGCGCCGAGCTG
GACAGGGTGTTGGGTGGTGGTCTGGTCGACGGTTCGGTGGTGTTGATCGGTGGCGATCCCGGTATCGGCAAGTCGACCAT
TCTGTTGCAGACCCTGTGTGCCATCGCCACGCGCATGCCAGCGTTGTATGTCACTGGTGAAGAATCCCAGCAGCAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACTGAGACCTGCATCGAGGCGATCATCGCC
ACTGCGCGAGTGGAAAAGCCCAAGGTCATGGTCATCGACTCAATCCAGACCATCTTCACTGAGCAACTGCAATCGGCACC
CGGCGGCGTATCCCAGGTGCGCGAAAGTGCGGCCCTGCTGGTGCGCTATGCCAAGCAGAGTGGGACGGCGATCTTCCTCG
TCGGTCATGTCACCAAGGAAGGCGCGCTGGCGGGGCCACGGGTGCTTGAGCACATGGTCGATACTGTCTTGTATTTCGAG
GGCGAGTCCGATGGCCGCCTGCGTTTGCTGCGAGCGGTAAAGAACCGCTTTGGTGCGGTCAACGAATTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAGGAAGTCTCCAACCCTTCGGCAATCTTTCTGACGCGTGCCCAGGAAGAGGTGCCCGGCA
GCGTGGTCATGGCTACCTGGGAAGGTACCCGACCGATGCTGGTGGAAGTCCAGGCCCTGGTTGACGACAGCCATTTGTCC
AATCCGCGCCGGGTGACCCTGGGCCTGGATCAGAACCGTCTGGCAATGCTCTTGGCGGTACTCCACCGCCATGGCGGGAT
TCCCACCCATGATCAGGATGTATTCCTTAACGTAGTAGGTGGGGTCAAGGTGCTCGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGATCATGTCCAGCCTGCGCAACCGTCCGCTGGACAATGGCTTGCTGGTGTTCGGCGAGGTTGGCCTGTCGGGG
GAAGTACGACCGGTGCCCAGTGGCCAGGAGCGCTTGAAAGAGGCAGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAAGAAGCCCCACCCGGCCTTCAAGTCATTGCTGTGACACGCCTGGAGCAGGCGCTGGACGCATTGT
TCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.623

100

0.47
  radA Streptococcus pneumoniae R6

46.623

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.623

100

0.47
  radA Streptococcus pneumoniae D39

46.623

100

0.47
  radA Streptococcus mitis SK321

46.813

100

0.468
  radA Streptococcus mitis NCTC 12261

46.593

100

0.466

Multiple sequence alignment