Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB4Y30_RS17585 Genome accession   NZ_CP162599
Coordinates   3678651..3679133 (-) Length   160 a.a.
NCBI ID   WP_368653485.1    Uniprot ID   A0AB39HQ73
Organism   Ornithinibacillus sp. 4-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3673651..3684133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y30_RS17560 (AB4Y30_17560) - 3675096..3676043 (-) 948 WP_368653480.1 YybS family protein -
  AB4Y30_RS17565 (AB4Y30_17565) - 3676350..3676835 (+) 486 WP_368653481.1 DUF1189 family protein -
  AB4Y30_RS17570 (AB4Y30_17570) - 3677010..3677246 (-) 237 WP_368653482.1 fibronectin type III domain-containing protein -
  AB4Y30_RS17575 (AB4Y30_17575) - 3677459..3678217 (+) 759 WP_368653483.1 creatininase family protein -
  AB4Y30_RS17580 (AB4Y30_17580) rpsR 3678355..3678585 (-) 231 WP_368653484.1 30S ribosomal protein S18 -
  AB4Y30_RS17585 (AB4Y30_17585) ssbA 3678651..3679133 (-) 483 WP_368653485.1 single-stranded DNA-binding protein Machinery gene
  AB4Y30_RS17590 (AB4Y30_17590) rpsF 3679152..3679439 (-) 288 WP_368653486.1 30S ribosomal protein S6 -
  AB4Y30_RS17595 (AB4Y30_17595) ychF 3679608..3680708 (-) 1101 WP_368653487.1 redox-regulated ATPase YchF -
  AB4Y30_RS17600 (AB4Y30_17600) - 3680894..3681094 (-) 201 WP_368653488.1 DUF951 domain-containing protein -
  AB4Y30_RS17605 (AB4Y30_17605) - 3681127..3681942 (-) 816 WP_368653489.1 mechanosensitive ion channel family protein -
  AB4Y30_RS17610 (AB4Y30_17610) - 3682097..3682804 (-) 708 WP_368653490.1 DUF554 domain-containing protein -
  AB4Y30_RS17615 (AB4Y30_17615) - 3682856..3684010 (-) 1155 WP_368653491.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17648.48 Da        Isoelectric Point: 4.5349

>NTDB_id=1027390 AB4Y30_RS17585 WP_368653485.1 3678651..3679133(-) (ssbA) [Ornithinibacillus sp. 4-3]
MLNRVVLVGRLTRDPDLRYTPSGVAVANFTLAVNRPFTNQQGNRDADFINCVVWRRPAENLANYMKKGNLVGVDGRLQSR
SYEGQDGKMVYITEVVADSVQFLESRGAGAVSGQGQSGYQPNQDYNQNPYPTQPSPVKYDDGPFQNDGGPVDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1027390 AB4Y30_RS17585 WP_368653485.1 3678651..3679133(-) (ssbA) [Ornithinibacillus sp. 4-3]
ATGTTAAATCGAGTTGTGCTTGTCGGTAGATTGACAAGAGATCCTGATTTACGCTATACGCCTAGTGGTGTAGCTGTAGC
AAACTTCACGTTGGCAGTAAACCGACCTTTTACAAATCAACAAGGTAATCGAGATGCAGATTTTATTAACTGTGTCGTTT
GGCGTAGGCCAGCAGAAAACCTTGCTAATTATATGAAAAAGGGAAATCTTGTTGGTGTAGATGGACGTCTACAATCTCGT
AGTTATGAAGGACAAGATGGTAAAATGGTTTATATAACAGAGGTTGTCGCAGATAGCGTACAATTCCTTGAATCTAGAGG
AGCAGGTGCTGTTTCAGGACAAGGTCAATCAGGATATCAGCCAAATCAAGACTATAACCAGAATCCATATCCAACTCAAC
CCTCACCAGTTAAATACGATGATGGTCCTTTCCAAAATGATGGTGGCCCAGTCGATATTTCTGACGATGATTTACCGTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.625
  ssb Latilactobacillus sakei subsp. sakei 23K

54.023

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.577

65

0.394
  ssb Neisseria gonorrhoeae MS11

36.047

100

0.388
  ssb Glaesserella parasuis strain SC1401

34.444

100

0.387
  ssb Neisseria meningitidis MC58

34.302

100

0.369

Multiple sequence alignment