Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3N04_RS11540 Genome accession   NZ_CP162551
Coordinates   1969833..1970324 (+) Length   163 a.a.
NCBI ID   WP_047972680.1    Uniprot ID   A0AB39BNP8
Organism   Alkalihalophilus sp. As8PL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1964833..1975324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS11510 (AB3N04_11510) - 1964906..1965607 (+) 702 WP_368502936.1 DUF554 domain-containing protein -
  AB3N04_RS11515 (AB3N04_11515) yyaC 1965641..1966288 (-) 648 WP_317121905.1 spore protease YyaC -
  AB3N04_RS11520 (AB3N04_11520) - 1966390..1967412 (+) 1023 WP_317121904.1 hypothetical protein -
  AB3N04_RS11525 (AB3N04_11525) - 1967503..1967703 (+) 201 WP_317121903.1 DUF951 domain-containing protein -
  AB3N04_RS11530 (AB3N04_11530) ychF 1967838..1968938 (+) 1101 WP_368502937.1 redox-regulated ATPase YchF -
  AB3N04_RS11535 (AB3N04_11535) rpsF 1969519..1969806 (+) 288 WP_317121901.1 30S ribosomal protein S6 -
  AB3N04_RS11540 (AB3N04_11540) ssbA 1969833..1970324 (+) 492 WP_047972680.1 single-stranded DNA-binding protein Machinery gene
  AB3N04_RS11545 (AB3N04_11545) rpsR 1970396..1970629 (+) 234 WP_047972679.1 30S ribosomal protein S18 -
  AB3N04_RS11550 (AB3N04_11550) - 1970871..1971809 (+) 939 WP_368502938.1 YybS family protein -
  AB3N04_RS11555 (AB3N04_11555) - 1971821..1973785 (+) 1965 WP_368502939.1 DHH family phosphoesterase -
  AB3N04_RS11560 (AB3N04_11560) rplI 1973787..1974233 (+) 447 WP_317121898.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17839.60 Da        Isoelectric Point: 4.9528

>NTDB_id=1027080 AB3N04_RS11540 WP_047972680.1 1969833..1970324(+) (ssbA) [Alkalihalophilus sp. As8PL]
MLNRVVLVGRLTKDPELRYTPSGVAVANFTLAVNRAFSNQQGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRIQTR
SYDNNEGRRVFITEVVAESVQFLEPKGSNQGQGNAFPSGGSPTGGNDYSRQNQQPNRQSGGFNDDPFANDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1027080 AB3N04_RS11540 WP_047972680.1 1969833..1970324(+) (ssbA) [Alkalihalophilus sp. As8PL]
ATGCTAAACCGTGTCGTACTAGTTGGGCGTTTAACTAAAGATCCAGAGCTACGCTACACACCGAGTGGAGTAGCAGTAGC
GAACTTTACGCTCGCAGTCAATCGTGCATTTTCAAACCAGCAAGGAGAGCGTGAAGCAGACTTCATTAACTGTGTCGTTT
GGCGTAAACCTGCTGAAAATGTTGCGAATTACCTTAAAAAAGGTAGCTTAGCGGGTGTAGACGGCCGAATCCAAACTAGA
AGCTATGACAACAATGAAGGACGTCGTGTCTTTATCACAGAAGTTGTGGCTGAAAGTGTGCAATTCCTAGAACCAAAAGG
ATCAAACCAAGGGCAAGGGAATGCATTTCCTTCTGGCGGATCACCAACTGGTGGTAACGATTATAGCAGACAGAATCAAC
AGCCCAATCGTCAATCTGGTGGATTTAATGATGATCCATTTGCCAATGATGGCAAGCCAATTGACATTTCGGATGATGAT
CTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.182

100

0.736
  ssb Latilactobacillus sakei subsp. sakei 23K

55.233

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

65.031

0.423
  ssb Neisseria meningitidis MC58

34.483

100

0.368
  ssb Neisseria gonorrhoeae MS11

33.714

100

0.362

Multiple sequence alignment