Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB3473_RS06430 Genome accession   NZ_CP162537
Coordinates   1317537..1317854 (+) Length   105 a.a.
NCBI ID   WP_056936206.1    Uniprot ID   -
Organism   Staphylococcus equorum strain UPB 1351     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312537..1322854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3473_RS06395 (AB3473_06395) - 1312676..1312876 (+) 201 WP_002512453.1 YqgQ family protein -
  AB3473_RS06400 (AB3473_06400) - 1313466..1314452 (+) 987 WP_002507500.1 glucokinase -
  AB3473_RS06405 (AB3473_06405) - 1314452..1314775 (+) 324 WP_002507501.1 MTH1187 family thiamine-binding protein -
  AB3473_RS06410 (AB3473_06410) - 1314777..1315400 (+) 624 WP_002507502.1 MBL fold metallo-hydrolase -
  AB3473_RS06415 (AB3473_06415) comGA 1315500..1316474 (+) 975 WP_002507503.1 competence type IV pilus ATPase ComGA Machinery gene
  AB3473_RS06420 (AB3473_06420) - 1316446..1317168 (+) 723 WP_398574381.1 type II secretion system F family protein -
  AB3473_RS06425 (AB3473_06425) - 1317168..1317512 (+) 345 WP_398574382.1 type II secretion system F family protein -
  AB3473_RS06430 (AB3473_06430) comGC 1317537..1317854 (+) 318 WP_056936206.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3473_RS06435 (AB3473_06435) comGD 1317835..1318278 (+) 444 WP_238536966.1 competence type IV pilus minor pilin ComGD -
  AB3473_RS06440 (AB3473_06440) - 1318265..1318564 (+) 300 WP_002507507.1 hypothetical protein -
  AB3473_RS06445 (AB3473_06445) comGF 1318536..1318979 (+) 444 WP_002507508.1 competence type IV pilus minor pilin ComGF -
  AB3473_RS06450 (AB3473_06450) - 1319186..1319659 (+) 474 WP_230456625.1 shikimate kinase -
  AB3473_RS06455 (AB3473_06455) gcvT 1319838..1320929 (+) 1092 WP_002507510.1 glycine cleavage system aminomethyltransferase GcvT -
  AB3473_RS06460 (AB3473_06460) gcvPA 1320947..1322299 (+) 1353 WP_069818652.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11683.74 Da        Isoelectric Point: 8.4835

>NTDB_id=1027027 AB3473_RS06430 WP_056936206.1 1317537..1317854(+) (comGC) [Staphylococcus equorum strain UPB 1351]
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMIDSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTGSTISINNGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1027027 AB3473_RS06430 WP_056936206.1 1317537..1317854(+) (comGC) [Staphylococcus equorum strain UPB 1351]
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAGACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCAACAATTTCAATAAATAATGGTGAAGCGGTTGCTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

68.627

97.143

0.667
  comGC Staphylococcus aureus MW2

68.627

97.143

0.667
  comYC Streptococcus gordonii str. Challis substr. CH1

44.444

100

0.457
  comGC/cglC Streptococcus mitis NCTC 12261

41.053

90.476

0.371
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

44.186

81.905

0.362
  comYC Streptococcus mutans UA159

44.186

81.905

0.362

Multiple sequence alignment