Detailed information NTG1026942

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: AB3463_RS14970
• Genome accession: NZ_CP162523
• Coordinates: 3436239..3437975 (-)
• Length: 578 a.a.
• NCBI ID: WP_058363042.1
• Uniprot ID: -
• Organism: Xanthomonas translucens pv. undulosa strain UPB 513
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3425639..3436064	3436239..3437975	flank	175

Gene organization within MGE regions

Location: 3425639..3437975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3463_RS14925 (AB3463_14950)	-	3425639..3427918 (+)	2280	WP_248646114.1	hypothetical protein	-
AB3463_RS14930 (AB3463_14955)	-	3428031..3428336 (-)	306	WP_003466368.1	PQQ-binding-like beta-propeller repeat protein	-
AB3463_RS14935 (AB3463_14960)	-	3428285..3429268 (-)	984	WP_399506519.1	hypothetical protein	-
AB3463_RS14940 (AB3463_14965)	sucD	3429868..3430740 (-)	873	WP_003466372.1	succinate--CoA ligase subunit alpha	-
AB3463_RS14945 (AB3463_14970)	sucC	3430764..3431927 (-)	1164	WP_003466374.1	ADP-forming succinate--CoA ligase subunit beta	-
AB3463_RS14950 (AB3463_14975)	-	3432168..3433781 (+)	1614	WP_058361135.1	PAS domain-containing sensor histidine kinase	-
AB3463_RS14955 (AB3463_14980)	pilR	3433856..3435244 (+)	1389	WP_003466378.1	sigma-54 dependent transcriptional regulator	Regulator
AB3463_RS14960 (AB3463_14985)	-	3435433..3435615 (+)	183	WP_003466380.1	YhfG family protein	-
AB3463_RS14965 (AB3463_14990)	-	3435612..3436064 (+)	453	WP_230811680.1	Fic family protein	-
AB3463_RS14970 (AB3463_14995)	pilB	3436239..3437975 (-)	1737	WP_058363042.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 578 a.a.
• Molecular weight: 62859.13 Da
• Isoelectric Point: 6.3627

>NTDB_id=1026942 AB3463_RS14970 WP_058363042.1 3436239..3437975(-) (pilB) [Xanthomonas translucens pv. undulosa strain UPB 513]
MNAVTSANLVGITGIARRLVQDGALEETAARTAMAHAAEAKIPLPQWFSDKKLVTAAQLAAANALEFGMPLLDVSVFDAS
QSAMKLVSEELVHKHQVLPLFKRGNRLFVGMSNPTQTRALDDIKFHTNLTVEPILVDEDQIRRTLEQWQASNDAIGDALG
DDDEAMGKLEVGAGDEDMGSGGDTGVDAKGDDTPVVKFVNKMLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKSVARAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKIVLRVLDGSAAKLGIDKLGYEPEQQK
LFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAVALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRPTHLP
HNALLAEGFSEAEVAAGIQLYEAVGCDECTEGYKGRTGIYQVMPMNDEIAAIVLQGGNAMDIAQAAQKIGVKDLRQSALL
KARAGITSLAEINRVTKD

Nucleotide

• Length: 1737 bp

>NTDB_id=1026942 AB3463_RS14970 WP_058363042.1 3436239..3437975(-) (pilB) [Xanthomonas translucens pv. undulosa strain UPB 513]
ATGAACGCTGTGACATCCGCCAATCTCGTCGGCATCACCGGCATCGCCCGCCGCCTGGTTCAGGATGGCGCGCTCGAGGA
AACGGCTGCGCGGACCGCGATGGCGCATGCCGCCGAGGCGAAGATCCCGCTGCCGCAGTGGTTCTCGGACAAGAAGCTGG
TCACCGCGGCGCAGCTGGCCGCCGCCAATGCGCTGGAGTTCGGGATGCCGTTGCTGGACGTGTCGGTGTTCGATGCCAGC
CAGAGCGCGATGAAGCTGGTCAGCGAGGAGCTGGTGCACAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGTCT
GTTCGTCGGGATGAGCAATCCGACCCAGACCCGGGCGCTGGACGATATCAAGTTCCATACCAATTTGACGGTCGAGCCGA
TCCTGGTCGATGAGGACCAGATCCGCCGCACCCTGGAACAGTGGCAGGCGAGCAACGATGCGATCGGCGACGCGCTGGGC
GACGACGACGAGGCTATGGGCAAGCTCGAGGTCGGTGCCGGCGACGAGGACATGGGCAGCGGCGGCGATACCGGCGTCGA
TGCCAAGGGCGACGATACGCCCGTGGTCAAGTTCGTGAACAAGATGCTGGTCGATGCGATCCGCCGCGGCGCGTCGGACA
TCCATTTCGAGCCGTACGAGGACGATTACCGGGTGCGCCTGCGCATCGACGGCCTGCTCAAGAGCGTGGCCAGGGCGCCG
GTCAAGCTCAACCAGCGCATTGCGGCGCGGCTCAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGA
CGGACGCATCAAGCTCAACCTGTCCAAGAGCAAGCAGATCGATTTCCGCGTCAGCACGCTGCCGACCTTGTTCGGCGAGA
AGATCGTGCTGCGTGTCCTCGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTCGGCTACGAGCCGGAGCAGCAGAAG
CTGTTCCTGGACGCGATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACGGTGTCGCT
GTACACCGCGCTGGGCATCCTCAACGACGAGACCCGCAACATCTCCACGGCCGAAGACCCGGTCGAAATCCGCCTGCCCG
GGGTCAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGTGGCGCTGCGCTCGTTCCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGACCTGGAAACCGCCGAGATCGCGATCAAGGCGGCGCAGACCGGCCACATGGT
GCTGTCCACGCTGCACACCAACGATGCGCCGCAGACCATCGCGCGGCTGATGAACATGGGGATCGCGCCGTACAACATCA
CCAGTTCGGTGACGCTGGTGATCGCGCAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCCCGACCCATCTGCCG
CACAATGCGCTGCTGGCCGAGGGTTTCAGCGAGGCGGAAGTGGCCGCCGGCATCCAGCTGTACGAGGCGGTGGGCTGCGA
CGAGTGCACCGAGGGCTACAAGGGCCGCACCGGCATCTATCAGGTGATGCCGATGAACGACGAGATCGCGGCGATCGTGC
TGCAGGGCGGCAACGCGATGGACATCGCCCAGGCCGCGCAGAAGATCGGGGTCAAGGACCTGCGCCAGTCGGCGCTGCTC
AAGGCGCGCGCCGGCATCACCAGCCTGGCGGAGATCAATCGCGTGACCAAGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (201-468)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (51-152)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baylyi ADP1	54.754	98.27	0.538
pilB	Acinetobacter baumannii D1279779	54.101	99.135	0.536
pilB	Legionella pneumophila strain ERS1305867	52.548	98.443	0.517
pilB	Vibrio cholerae strain A1552	48.873	99.827	0.488
pilF	Neisseria gonorrhoeae MS11	48.592	98.27	0.478
pilB	Vibrio parahaemolyticus RIMD 2210633	46.996	97.924	0.46
pilB	Vibrio campbellii strain DS40M4	45.518	98.443	0.448
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.23	90.311	0.363
pilF	Thermus thermophilus HB27	40.192	89.965	0.362