Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB3463_RS14955 Genome accession   NZ_CP162523
Coordinates   3433856..3435244 (+) Length   462 a.a.
NCBI ID   WP_003466378.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain UPB 513     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3425639..3436064 3433856..3435244 within 0


Gene organization within MGE regions


Location: 3425639..3436064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3463_RS14925 (AB3463_14950) - 3425639..3427918 (+) 2280 WP_248646114.1 hypothetical protein -
  AB3463_RS14930 (AB3463_14955) - 3428031..3428336 (-) 306 WP_003466368.1 PQQ-binding-like beta-propeller repeat protein -
  AB3463_RS14935 (AB3463_14960) - 3428285..3429268 (-) 984 WP_399506519.1 hypothetical protein -
  AB3463_RS14940 (AB3463_14965) sucD 3429868..3430740 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  AB3463_RS14945 (AB3463_14970) sucC 3430764..3431927 (-) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  AB3463_RS14950 (AB3463_14975) - 3432168..3433781 (+) 1614 WP_058361135.1 PAS domain-containing sensor histidine kinase -
  AB3463_RS14955 (AB3463_14980) pilR 3433856..3435244 (+) 1389 WP_003466378.1 sigma-54 dependent transcriptional regulator Regulator
  AB3463_RS14960 (AB3463_14985) - 3435433..3435615 (+) 183 WP_003466380.1 YhfG family protein -
  AB3463_RS14965 (AB3463_14990) - 3435612..3436064 (+) 453 WP_230811680.1 Fic family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49892.38 Da        Isoelectric Point: 6.7311

>NTDB_id=1026941 AB3463_RS14955 WP_003466378.1 3433856..3435244(+) (pilR) [Xanthomonas translucens pv. undulosa strain UPB 513]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1026941 AB3463_RS14955 WP_003466378.1 3433856..3435244(+) (pilR) [Xanthomonas translucens pv. undulosa strain UPB 513]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.198

100

0.474

Multiple sequence alignment