Detailed information NTG1026467

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: AB3X08_RS05705
• Genome accession: NZ_CP162490
• Coordinates: 1333359..1335095 (+)
• Length: 578 a.a.
• NCBI ID: WP_369936839.1
• Uniprot ID: -
• Organism: Xanthomonas tesorieronis strain DAR 34887
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1324602..1342690	1333359..1335095	within	0

Gene organization within MGE regions

Location: 1324602..1342690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3X08_RS05665 (AB3X08_05665)	-	1324602..1325207 (-)	606	WP_369938442.1	glycosyltransferase	-
AB3X08_RS05670 (AB3X08_05670)	-	1325268..1325744 (-)	477	Protein_1114	glycosyltransferase family 4 protein	-
AB3X08_RS05675 (AB3X08_05675)	-	1325978..1327132 (-)	1155	WP_369936830.1	glycosyltransferase family 4 protein	-
AB3X08_RS05680 (AB3X08_05680)	asnB	1327122..1329026 (-)	1905	WP_369936831.1	asparagine synthase (glutamine-hydrolyzing)	-
AB3X08_RS05685 (AB3X08_05685)	-	1329014..1329823 (-)	810	WP_369936833.1	class I SAM-dependent methyltransferase	-
AB3X08_RS05690 (AB3X08_05690)	-	1329799..1331058 (-)	1260	WP_369936834.1	lipopolysaccharide biosynthesis protein	-
AB3X08_RS05695 (AB3X08_05695)	-	1331055..1332338 (-)	1284	WP_369936836.1	glycosyltransferase family 4 protein	-
AB3X08_RS05700 (AB3X08_05700)	-	1332344..1333213 (-)	870	WP_369936838.1	glycosyltransferase family 2 protein	-
AB3X08_RS05705 (AB3X08_05705)	pilB	1333359..1335095 (+)	1737	WP_369936839.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB3X08_RS05710 (AB3X08_05710)	pilR	1335261..1336649 (-)	1389	WP_369936840.1	sigma-54-dependent transcriptional regulator	Regulator
AB3X08_RS05715 (AB3X08_05715)	-	1336724..1338337 (-)	1614	WP_369936841.1	sensor histidine kinase	-
AB3X08_RS05720 (AB3X08_05720)	sucC	1338636..1339805 (+)	1170	WP_010342227.1	ADP-forming succinate--CoA ligase subunit beta	-
AB3X08_RS05725 (AB3X08_05725)	sucD	1339828..1340703 (+)	876	WP_026144653.1	succinate--CoA ligase subunit alpha	-
AB3X08_RS05730 (AB3X08_05730)	-	1340783..1342690 (+)	1908	WP_369936842.1	acyltransferase family protein	-

Sequence

Protein

• Length: 578 a.a.
• Molecular weight: 62694.80 Da
• Isoelectric Point: 5.6021

>NTDB_id=1026467 AB3X08_RS05705 WP_369936839.1 1333359..1335095(+) (pilB) [Xanthomonas tesorieronis strain DAR 34887]
MNAAVSANLVGITGIARRLVQDGAVEEAVARTAMAHAAEAKIPLPQWFSEKKLVTAAQLAAANAVEFGMPLLDVSVFDAN
QNAMKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLTVEPILVDEDQIRRTLEQWQASNDSLGNALG
GDDEGMDNLEVGAGDEDMGGGGDSGVDAKSDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKSVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKIVLRILDGSAAKLGIDKLGYEPEQQK
LFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDDTRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRPTQLP
DNALLAEGFTEAEVAAGIQLYEAVGCDECTEGYKGRTGIYQVMPMNDEIAAIVLQGGNAMDIADAAQKIGVKDLRQSALL
KARAGITSLAEINRVTKD

Nucleotide

• Length: 1737 bp

>NTDB_id=1026467 AB3X08_RS05705 WP_369936839.1 1333359..1335095(+) (pilB) [Xanthomonas tesorieronis strain DAR 34887]
ATGAATGCAGCTGTCTCGGCCAACCTGGTTGGCATCACCGGCATCGCGCGCCGCCTGGTTCAGGATGGTGCGGTCGAAGA
AGCGGTCGCGCGGACCGCCATGGCGCATGCCGCCGAGGCCAAGATCCCGCTGCCGCAATGGTTTTCGGAGAAGAAGCTGG
TCACCGCGGCGCAGCTGGCCGCCGCCAATGCGGTCGAGTTCGGCATGCCGTTGCTGGATGTTTCGGTGTTCGATGCCAAC
CAGAACGCCATGAAGTTGGTCAGCGAGGAGTTGCTGCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGCT
GTTCGTGGGGGTCAGCAATCCGACCCAGACCCGGGCGCTGGACGACATCAAATTCCATACCAACCTGACGGTCGAGCCGA
TCCTGGTCGACGAGGACCAGATTCGGCGCACGCTGGAACAATGGCAGGCGAGCAACGATTCGCTCGGTAACGCGCTGGGC
GGTGACGACGAAGGCATGGACAACCTCGAGGTCGGTGCCGGCGACGAGGACATGGGCGGCGGCGGCGATAGCGGTGTCGA
TGCGAAGAGCGACGATACGCCCGTGGTCAAGTTCGTGAACAAGGTGCTGGTGGATGCGATCCGCCGTGGCGCCTCGGACA
TCCATTTCGAGCCGTACGAGGACGATTACCGGGTGCGCCTGCGCATCGATGGCCTGCTCAAGAGCGTGGCCAAGGCGCCG
GTCAAGCTCAACCAGCGCATCGCGGCGCGGTTGAAGGTGATGTCGCAACTGGACATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAATCTGTCCAAGAGCAAGCAGATCGACTTCCGTGTCAGCACGCTGCCGACGCTGTTCGGCGAGA
AGATCGTGCTGCGTATCCTCGACGGCAGTGCGGCCAAGCTGGGCATCGACAAGCTCGGTTACGAGCCGGAACAGCAGAAG
CTCTTTTTGGACGCGATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACGGTGTCGCT
GTACACCGCGCTGGGCATCCTCAACGACGATACCCGCAACATCTCCACCGCCGAAGATCCGGTGGAAATCCGCCTGCCCG
GGGTCAACCAGGTACAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGTTCGTTCCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGATCTGGAAACCGCCGAGATCGCGATCAAGGCGGCGCAGACCGGCCACATGGT
GCTGTCCACGCTGCACACCAACGATGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCA
CCAGTTCGGTGACGCTGGTGATCGCGCAGCGCCTGGCGCGGCGGCTGTGCAACAACTGCAAGCGCCCGACCCAGTTGCCG
GACAATGCCTTGCTGGCCGAGGGCTTCACCGAGGCCGAGGTCGCCGCCGGCATCCAGCTGTACGAGGCGGTGGGCTGCGA
CGAGTGCACCGAAGGCTACAAGGGCCGCACCGGCATCTATCAGGTGATGCCGATGAACGACGAGATCGCGGCCATCGTCT
TGCAGGGCGGCAACGCGATGGACATCGCCGATGCGGCGCAGAAGATCGGGGTCAAGGACCTGCGCCAGTCGGCGCTGCTC
AAGGCGCGCGCGGGCATTACCAGTCTGGCCGAGATCAATCGCGTCACGAAGGATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (201-468)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (50-153)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baylyi ADP1	55.36	98.443	0.545
pilB	Acinetobacter baumannii D1279779	55.166	98.789	0.545
pilB	Legionella pneumophila strain ERS1305867	52.197	98.443	0.514
pilF	Neisseria gonorrhoeae MS11	49.824	98.27	0.49
pilB	Vibrio cholerae strain A1552	51.391	93.253	0.479
pilB	Vibrio parahaemolyticus RIMD 2210633	46.466	97.924	0.455
pilB	Vibrio campbellii strain DS40M4	46.046	98.443	0.453
pilF	Thermus thermophilus HB27	39.81	90.83	0.362