Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB3X08_RS05710 Genome accession   NZ_CP162490
Coordinates   1335261..1336649 (-) Length   462 a.a.
NCBI ID   WP_369936840.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1324602..1342690 1335261..1336649 within 0


Gene organization within MGE regions


Location: 1324602..1342690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS05665 (AB3X08_05665) - 1324602..1325207 (-) 606 WP_369938442.1 glycosyltransferase -
  AB3X08_RS05670 (AB3X08_05670) - 1325268..1325744 (-) 477 Protein_1114 glycosyltransferase family 4 protein -
  AB3X08_RS05675 (AB3X08_05675) - 1325978..1327132 (-) 1155 WP_369936830.1 glycosyltransferase family 4 protein -
  AB3X08_RS05680 (AB3X08_05680) asnB 1327122..1329026 (-) 1905 WP_369936831.1 asparagine synthase (glutamine-hydrolyzing) -
  AB3X08_RS05685 (AB3X08_05685) - 1329014..1329823 (-) 810 WP_369936833.1 class I SAM-dependent methyltransferase -
  AB3X08_RS05690 (AB3X08_05690) - 1329799..1331058 (-) 1260 WP_369936834.1 lipopolysaccharide biosynthesis protein -
  AB3X08_RS05695 (AB3X08_05695) - 1331055..1332338 (-) 1284 WP_369936836.1 glycosyltransferase family 4 protein -
  AB3X08_RS05700 (AB3X08_05700) - 1332344..1333213 (-) 870 WP_369936838.1 glycosyltransferase family 2 protein -
  AB3X08_RS05705 (AB3X08_05705) pilB 1333359..1335095 (+) 1737 WP_369936839.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB3X08_RS05710 (AB3X08_05710) pilR 1335261..1336649 (-) 1389 WP_369936840.1 sigma-54-dependent transcriptional regulator Regulator
  AB3X08_RS05715 (AB3X08_05715) - 1336724..1338337 (-) 1614 WP_369936841.1 sensor histidine kinase -
  AB3X08_RS05720 (AB3X08_05720) sucC 1338636..1339805 (+) 1170 WP_010342227.1 ADP-forming succinate--CoA ligase subunit beta -
  AB3X08_RS05725 (AB3X08_05725) sucD 1339828..1340703 (+) 876 WP_026144653.1 succinate--CoA ligase subunit alpha -
  AB3X08_RS05730 (AB3X08_05730) - 1340783..1342690 (+) 1908 WP_369936842.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49809.25 Da        Isoelectric Point: 6.5828

>NTDB_id=1026468 AB3X08_RS05710 WP_369936840.1 1335261..1336649(-) (pilR) [Xanthomonas tesorieronis strain DAR 34887]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGASVEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRVTPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1026468 AB3X08_RS05710 WP_369936840.1 1335261..1336649(-) (pilR) [Xanthomonas tesorieronis strain DAR 34887]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGGGTCGGCAAGGAGCTGGTGGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTCCCCGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCGGACCAGGCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTTCGCCCGGTCGGCGC
CTCGGTCGAAGTGCCGACCGACGTGCGCATCCTCTCCGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGATGGCCGCT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCGAAGAGCCATGGCCGGGTCACTCCCCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTATGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCCGCCGAAGCCGCTCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.092

99.351

0.617
  pilR Acinetobacter baumannii strain A118

46.97

100

0.47

Multiple sequence alignment