Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3N47_RS22710 Genome accession   NZ_CP162155
Coordinates   4804989..4806509 (+) Length   506 a.a.
NCBI ID   WP_095428115.1    Uniprot ID   -
Organism   Enterobacter cloacae strain STK66-C     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4799989..4811509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N47_RS22685 (AB3N47_22685) ilvE 4801555..4802484 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  AB3N47_RS22690 (AB3N47_22690) ilvM 4802503..4802766 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  AB3N47_RS22695 (AB3N47_22695) ilvG 4802763..4804409 (-) 1647 WP_095428116.1 acetolactate synthase 2 catalytic subunit -
  AB3N47_RS22700 (AB3N47_22700) ilvX 4804412..4804462 (-) 51 WP_102046757.1 peptide IlvX -
  AB3N47_RS22705 (AB3N47_22705) ilvL 4804549..4804647 (-) 99 WP_023620831.1 ilv operon leader peptide -
  AB3N47_RS22710 (AB3N47_22710) comM 4804989..4806509 (+) 1521 WP_095428115.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3N47_RS22715 (AB3N47_22715) - 4806542..4806880 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  AB3N47_RS22720 (AB3N47_22720) hdfR 4806999..4807820 (+) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55012.04 Da        Isoelectric Point: 7.4367

>NTDB_id=1024351 AB3N47_RS22710 WP_095428115.1 4804989..4806509(+) (comM) [Enterobacter cloacae strain STK66-C]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHTLSEPEETGDILPESPDDLNDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTAKVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVKGDPEI
ERHHLQEALSYRAIDRLLLHMQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1024351 AB3N47_RS22710 WP_095428115.1 4804989..4806509(+) (comM) [Enterobacter cloacae strain STK66-C]
ATGTCACTGTCAGTTGTTTACACGCGTGCGGCGATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACACTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCCAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACTGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGATGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATACGCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAACGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCTGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGAAATCATAATCGCTGCACACCTGAGCAGACGCTGCGCTATCTGGGTAAGCTGTCAGGTC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCATTACCGCCCCCAGGTTTGCTCAGCCAAACAACGATACGCGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGAAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACATGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.594

100

0.593
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio campbellii strain DS40M4

59.127

99.605

0.589
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437

Multiple sequence alignment