Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AB3F25_RS07020 | Genome accession | NZ_CP162010 |
| Coordinates | 1514237..1515457 (+) | Length | 406 a.a. |
| NCBI ID | WP_373603146.1 | Uniprot ID | - |
| Organism | Aggregatibacter sp. HMT-949 strain W10649 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1509237..1520457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3F25_RS06995 (AB3F25_06995) | - | 1509792..1510589 (-) | 798 | WP_373603142.1 | sulfite exporter TauE/SafE family protein | - |
| AB3F25_RS07000 (AB3F25_07000) | rppH | 1510709..1511177 (-) | 469 | Protein_1338 | RNA pyrophosphohydrolase | - |
| AB3F25_RS07005 (AB3F25_07005) | ampD | 1511703..1512266 (-) | 564 | WP_373603143.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AB3F25_RS07010 (AB3F25_07010) | pilA | 1512391..1512828 (+) | 438 | WP_373603144.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AB3F25_RS07015 (AB3F25_07015) | pilB | 1512825..1514222 (+) | 1398 | WP_373603145.1 | GspE/PulE family protein | Machinery gene |
| AB3F25_RS07020 (AB3F25_07020) | pilC | 1514237..1515457 (+) | 1221 | WP_373603146.1 | type II secretion system F family protein | Machinery gene |
| AB3F25_RS07025 (AB3F25_07025) | pilD | 1515454..1516140 (+) | 687 | WP_373603147.1 | prepilin peptidase | Machinery gene |
| AB3F25_RS07030 (AB3F25_07030) | coaE | 1516372..1516995 (+) | 624 | WP_373603148.1 | dephospho-CoA kinase | - |
| AB3F25_RS07035 (AB3F25_07035) | yacG | 1516985..1517191 (+) | 207 | WP_373603149.1 | DNA gyrase inhibitor YacG | - |
| AB3F25_RS07040 (AB3F25_07040) | - | 1517344..1518348 (+) | 1005 | WP_373603150.1 | ornithine carbamoyltransferase | - |
| AB3F25_RS07045 (AB3F25_07045) | arcC | 1518423..1519367 (+) | 945 | WP_373603151.1 | carbamate kinase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 46169.53 Da Isoelectric Point: 10.1256
>NTDB_id=1023491 AB3F25_RS07020 WP_373603146.1 1514237..1515457(+) (pilC) [Aggregatibacter sp. HMT-949 strain W10649]
MAKKLFYYRARNTLEQLQKGSIIADSIRAAEFQLMNRGLTNIKLQQNWQFNNKPKNAEISALLNQLAILLQSAISLKNSL
QILQQNCTQLALNEWVEQLLQSIESGLSFSQSIERQGKYLTRQEIQLIQVGEMTGKLALVCGKIASHRNHSLALQRKLQK
IMLYPSMVLGISLSLTLMLLLFIVPQFAEMYQSNNSELPTLTRVLLTMSNFLREELYILLLLSLFLGLFYHLKFKQSPHF
KQQKARIIALMPIFGKIQQLSRLVNFSQNLHIMLQAGVPLNQALNSFLPRAQSWQIKSPLTSDAVLDGEVKSILQWVSQG
YAFSDSISSRLFPMEAQQMLQIGEKSGKLALMLQHIAENYQEKLNHQIDLLSQMLEPLMMVIIGGLIGIIMMGMYLPIFN
MGSVVQ
MAKKLFYYRARNTLEQLQKGSIIADSIRAAEFQLMNRGLTNIKLQQNWQFNNKPKNAEISALLNQLAILLQSAISLKNSL
QILQQNCTQLALNEWVEQLLQSIESGLSFSQSIERQGKYLTRQEIQLIQVGEMTGKLALVCGKIASHRNHSLALQRKLQK
IMLYPSMVLGISLSLTLMLLLFIVPQFAEMYQSNNSELPTLTRVLLTMSNFLREELYILLLLSLFLGLFYHLKFKQSPHF
KQQKARIIALMPIFGKIQQLSRLVNFSQNLHIMLQAGVPLNQALNSFLPRAQSWQIKSPLTSDAVLDGEVKSILQWVSQG
YAFSDSISSRLFPMEAQQMLQIGEKSGKLALMLQHIAENYQEKLNHQIDLLSQMLEPLMMVIIGGLIGIIMMGMYLPIFN
MGSVVQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=1023491 AB3F25_RS07020 WP_373603146.1 1514237..1515457(+) (pilC) [Aggregatibacter sp. HMT-949 strain W10649]
ATGGCAAAAAAACTTTTTTACTATCGCGCACGGAACACCTTAGAACAACTGCAAAAAGGTTCTATTATTGCCGATTCCAT
CCGTGCGGCAGAATTTCAACTAATGAATCGCGGATTGACAAATATCAAACTGCAACAAAATTGGCAATTTAACAACAAGC
CAAAAAATGCGGAAATCAGCGCATTATTAAACCAACTTGCCATATTATTACAATCTGCCATTTCGCTTAAAAATAGCCTG
CAAATATTGCAGCAGAATTGCACCCAACTCGCATTAAACGAATGGGTCGAGCAACTTTTACAGAGCATTGAATCCGGTTT
ATCCTTTTCACAAAGTATTGAACGGCAAGGGAAATACCTCACTCGACAAGAAATTCAACTAATTCAGGTGGGCGAAATGA
CCGGCAAATTGGCATTAGTATGCGGGAAAATAGCGTCACATCGTAATCACTCTTTGGCGTTACAACGCAAGTTGCAAAAA
ATTATGCTTTACCCATCAATGGTACTTGGCATTTCTCTGTCACTCACGTTGATGCTGTTGCTTTTTATTGTGCCGCAATT
TGCCGAAATGTACCAAAGCAACAATAGTGAACTACCGACTTTAACCCGAGTTTTACTCACGATGTCAAATTTTTTAAGAG
AAGAATTATATATTCTTTTGTTACTAAGCCTTTTTCTCGGACTTTTCTACCACTTAAAATTTAAGCAATCACCACATTTT
AAACAACAAAAAGCGCGTATTATCGCCCTCATGCCGATTTTCGGTAAAATTCAACAGCTTTCCCGCTTGGTTAATTTCAG
CCAAAATTTACACATTATGCTGCAGGCCGGCGTACCGCTAAATCAAGCGCTCAATAGTTTTCTACCGCGTGCCCAAAGTT
GGCAAATTAAGTCACCGCTTACCTCGGATGCGGTGCTAGACGGCGAGGTCAAATCAATTTTGCAATGGGTTTCACAAGGC
TATGCGTTTTCTGATAGCATTAGTAGCCGTCTGTTCCCGATGGAAGCGCAACAAATGCTGCAAATCGGTGAAAAGAGCGG
CAAACTTGCATTGATGTTGCAACATATTGCAGAAAATTATCAAGAAAAACTCAATCACCAAATTGATCTGCTTTCTCAAA
TGCTTGAACCTTTGATGATGGTGATCATCGGCGGTTTAATCGGCATAATTATGATGGGTATGTACTTACCGATTTTTAAT
ATGGGATCGGTAGTGCAATGA
ATGGCAAAAAAACTTTTTTACTATCGCGCACGGAACACCTTAGAACAACTGCAAAAAGGTTCTATTATTGCCGATTCCAT
CCGTGCGGCAGAATTTCAACTAATGAATCGCGGATTGACAAATATCAAACTGCAACAAAATTGGCAATTTAACAACAAGC
CAAAAAATGCGGAAATCAGCGCATTATTAAACCAACTTGCCATATTATTACAATCTGCCATTTCGCTTAAAAATAGCCTG
CAAATATTGCAGCAGAATTGCACCCAACTCGCATTAAACGAATGGGTCGAGCAACTTTTACAGAGCATTGAATCCGGTTT
ATCCTTTTCACAAAGTATTGAACGGCAAGGGAAATACCTCACTCGACAAGAAATTCAACTAATTCAGGTGGGCGAAATGA
CCGGCAAATTGGCATTAGTATGCGGGAAAATAGCGTCACATCGTAATCACTCTTTGGCGTTACAACGCAAGTTGCAAAAA
ATTATGCTTTACCCATCAATGGTACTTGGCATTTCTCTGTCACTCACGTTGATGCTGTTGCTTTTTATTGTGCCGCAATT
TGCCGAAATGTACCAAAGCAACAATAGTGAACTACCGACTTTAACCCGAGTTTTACTCACGATGTCAAATTTTTTAAGAG
AAGAATTATATATTCTTTTGTTACTAAGCCTTTTTCTCGGACTTTTCTACCACTTAAAATTTAAGCAATCACCACATTTT
AAACAACAAAAAGCGCGTATTATCGCCCTCATGCCGATTTTCGGTAAAATTCAACAGCTTTCCCGCTTGGTTAATTTCAG
CCAAAATTTACACATTATGCTGCAGGCCGGCGTACCGCTAAATCAAGCGCTCAATAGTTTTCTACCGCGTGCCCAAAGTT
GGCAAATTAAGTCACCGCTTACCTCGGATGCGGTGCTAGACGGCGAGGTCAAATCAATTTTGCAATGGGTTTCACAAGGC
TATGCGTTTTCTGATAGCATTAGTAGCCGTCTGTTCCCGATGGAAGCGCAACAAATGCTGCAAATCGGTGAAAAGAGCGG
CAAACTTGCATTGATGTTGCAACATATTGCAGAAAATTATCAAGAAAAACTCAATCACCAAATTGATCTGCTTTCTCAAA
TGCTTGAACCTTTGATGATGGTGATCATCGGCGGTTTAATCGGCATAATTATGATGGGTATGTACTTACCGATTTTTAAT
ATGGGATCGGTAGTGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
77.34 |
100 |
0.773 |
| pilC | Haemophilus influenzae 86-028NP |
76.108 |
100 |
0.761 |
| pilC | Glaesserella parasuis strain SC1401 |
38.404 |
98.768 |
0.379 |