Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AB3F25_RS07025 Genome accession   NZ_CP162010
Coordinates   1515454..1516140 (+) Length   228 a.a.
NCBI ID   WP_373603147.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510454..1521140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS07000 (AB3F25_07000) rppH 1510709..1511177 (-) 469 Protein_1338 RNA pyrophosphohydrolase -
  AB3F25_RS07005 (AB3F25_07005) ampD 1511703..1512266 (-) 564 WP_373603143.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AB3F25_RS07010 (AB3F25_07010) pilA 1512391..1512828 (+) 438 WP_373603144.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AB3F25_RS07015 (AB3F25_07015) pilB 1512825..1514222 (+) 1398 WP_373603145.1 GspE/PulE family protein Machinery gene
  AB3F25_RS07020 (AB3F25_07020) pilC 1514237..1515457 (+) 1221 WP_373603146.1 type II secretion system F family protein Machinery gene
  AB3F25_RS07025 (AB3F25_07025) pilD 1515454..1516140 (+) 687 WP_373603147.1 prepilin peptidase Machinery gene
  AB3F25_RS07030 (AB3F25_07030) coaE 1516372..1516995 (+) 624 WP_373603148.1 dephospho-CoA kinase -
  AB3F25_RS07035 (AB3F25_07035) yacG 1516985..1517191 (+) 207 WP_373603149.1 DNA gyrase inhibitor YacG -
  AB3F25_RS07040 (AB3F25_07040) - 1517344..1518348 (+) 1005 WP_373603150.1 ornithine carbamoyltransferase -
  AB3F25_RS07045 (AB3F25_07045) arcC 1518423..1519367 (+) 945 WP_373603151.1 carbamate kinase -
  AB3F25_RS07050 (AB3F25_07050) - 1519538..1520632 (-) 1095 WP_373603152.1 metallophosphoesterase -
  AB3F25_RS07055 (AB3F25_07055) - 1520753..1521082 (+) 330 WP_077433564.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25656.40 Da        Isoelectric Point: 8.0975

>NTDB_id=1023492 AB3F25_RS07025 WP_373603147.1 1515454..1516140(+) (pilD) [Aggregatibacter sp. HMT-949 strain W10649]
MIGFATFLLGGTLGVALYLYISGFIERLQTDVYAAYVELFPNNPPPFQKHLANLQTQKCGHVLQYFFVVGFIFSAFAALA
PSPSFALWFSTALALLWAIAYLDWRYRLISPTPCLGLLALGLFGAAQSFSDLMLEQSLQSAAGFFLLFYAVYWFAKWHYK
QEAFGRGDYWLALAIGSYLPLEQLPVFLLIACVTGILFALPLRKTKEFLPFAPFLCLSFIMLNAKYLI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1023492 AB3F25_RS07025 WP_373603147.1 1515454..1516140(+) (pilD) [Aggregatibacter sp. HMT-949 strain W10649]
ATGATTGGCTTCGCAACATTTTTACTCGGCGGAACCTTAGGCGTCGCATTATATCTTTATATTTCGGGCTTTATCGAACG
ATTACAAACGGATGTTTATGCCGCTTATGTCGAACTCTTCCCTAACAATCCTCCGCCTTTCCAAAAGCATTTAGCAAACC
TACAAACACAAAAATGCGGTCATGTTTTGCAATATTTTTTCGTTGTCGGATTTATTTTTAGCGCATTTGCCGCACTCGCG
CCGAGCCCCTCATTTGCCTTATGGTTTAGCACCGCATTGGCTTTGCTGTGGGCAATCGCTTATCTCGATTGGCGCTATCG
ACTCATATCACCAACGCCCTGTTTAGGATTGCTCGCCCTCGGATTATTCGGCGCAGCGCAATCGTTTTCAGATTTGATGT
TAGAACAAAGTCTACAAAGTGCAGCCGGTTTTTTCCTGCTTTTTTATGCCGTTTATTGGTTCGCCAAATGGCATTATAAA
CAAGAAGCCTTCGGTCGCGGAGACTACTGGCTCGCACTCGCTATCGGCAGCTACTTGCCATTAGAACAACTTCCGGTATT
TTTGCTGATTGCTTGTGTAACAGGAATTCTATTCGCTCTTCCACTCAGAAAAACCAAAGAATTTTTACCCTTTGCGCCTT
TTCTGTGTTTATCGTTCATTATGCTTAATGCGAAATATTTAATTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

57.658

97.368

0.561
  pilD Haemophilus influenzae 86-028NP

57.207

97.368

0.557

Multiple sequence alignment