Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   AB1395_RS10285 Genome accession   NZ_CP161815
Coordinates   2030851..2031999 (+) Length   382 a.a.
NCBI ID   WP_218653843.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2025851..2036999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS10265 (AB1395_10265) - 2027071..2029665 (+) 2595 WP_218653841.1 YfhO family protein -
  AB1395_RS10280 (AB1395_10280) rlmH 2030071..2030550 (-) 480 WP_218653842.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AB1395_RS10285 (AB1395_10285) htrA 2030851..2031999 (+) 1149 WP_218653843.1 S1C family serine protease Regulator
  AB1395_RS10290 (AB1395_10290) spo0J 2032053..2032820 (+) 768 WP_218653844.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 40671.25 Da        Isoelectric Point: 4.4215

>NTDB_id=1022614 AB1395_RS10285 WP_218653843.1 2030851..2031999(+) (htrA) [Streptococcus pluranimalium strain SS-15]
MAGAYLMLYFSNNLSTPLNNSQSKAKTSNVVYNNTTNTTKAAKKVQDAVVSVINYQKNADSSLNNLYSQLFGGDNDKRSE
DDLSVYSEGSGVIYRKEGGSAYIVTNNHVIDGAENIEIMLADGTKVVGELVGSDTYSDLAVVKISDEKVSTVAKFADSDK
LNVGEVAIAMGSPLGSEYANSVTQGIVSSLSRTVTLKNEEGETISTNAIQTDAAINPGNSGGALINIEGQVIGINSSKIS
STSTAREAVEGMGFAIPSNDVIKIINQLEKNGQVTRPALGIFMANLSDLSTSAISELNIPNKLTGGIVVATVQDNMPASG
KLKQYDVITEIDGEEITSTSDLQSILYDHEIGDTIKITYYRGKDKQTTDIKLSKSTQDLENR

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=1022614 AB1395_RS10285 WP_218653843.1 2030851..2031999(+) (htrA) [Streptococcus pluranimalium strain SS-15]
ATGGCAGGAGCTTATCTCATGCTCTATTTTTCCAATAACCTGTCAACTCCTTTGAATAATTCGCAATCCAAAGCCAAAAC
AAGCAATGTGGTTTACAATAATACTACCAACACGACCAAAGCAGCCAAAAAAGTCCAAGATGCTGTTGTATCAGTTATTA
ACTACCAAAAGAATGCCGATTCTTCTTTAAATAATCTTTATAGTCAACTGTTTGGTGGAGACAATGATAAGCGTTCTGAA
GATGATTTGAGTGTCTACAGCGAAGGCTCTGGCGTTATTTATCGAAAAGAAGGTGGATCAGCTTACATCGTCACTAACAA
TCACGTTATTGATGGAGCTGAAAATATTGAAATTATGCTTGCTGATGGAACAAAAGTCGTCGGAGAACTTGTTGGATCTG
ATACTTACTCCGATTTAGCTGTTGTCAAAATTTCTGATGAAAAAGTATCTACAGTTGCGAAGTTCGCAGACTCTGATAAA
TTAAACGTTGGAGAAGTAGCGATTGCAATGGGTAGCCCTCTAGGAAGTGAATATGCTAACTCTGTTACACAAGGGATTGT
GTCAAGTCTAAGCCGTACAGTAACGCTTAAAAATGAGGAGGGTGAAACCATTTCAACCAATGCTATCCAAACAGATGCTG
CCATCAATCCTGGTAACTCTGGTGGTGCTTTGATTAATATTGAAGGACAAGTTATTGGTATCAATTCAAGTAAAATCTCA
TCTACCTCAACTGCTCGCGAAGCCGTAGAAGGCATGGGATTTGCTATCCCATCTAATGATGTCATCAAAATAATCAACCA
GTTAGAAAAAAATGGACAAGTCACTCGCCCAGCACTAGGCATCTTTATGGCGAATCTTAGCGATCTCTCAACAAGTGCTA
TCTCAGAGCTTAATATTCCAAATAAGCTCACTGGAGGTATTGTTGTTGCCACTGTTCAAGATAACATGCCTGCCTCAGGT
AAACTGAAACAATATGATGTCATCACTGAAATTGATGGTGAAGAAATAACATCAACCAGTGATCTACAAAGTATTCTTTA
TGATCACGAAATTGGTGATACGATTAAAATCACCTACTACCGTGGTAAAGATAAGCAGACCACTGACATTAAGTTAAGCA
AGTCAACACAAGATTTAGAAAACCGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

66.31

97.906

0.649

  htrA Streptococcus gordonii str. Challis substr. CH1

59.211

99.476

0.589

  htrA Streptococcus pneumoniae D39

64.183

91.361

0.586

  htrA Streptococcus pneumoniae TIGR4

64.183

91.361

0.586

  htrA Streptococcus mitis NCTC 12261

64.183

91.361

0.586

  htrA Streptococcus pneumoniae R6

64.183

91.361

0.586

  htrA Streptococcus pneumoniae Rx1

64.183

91.361

0.586


Multiple sequence alignment