Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   AB1395_RS10290 Genome accession   NZ_CP161815
Coordinates   2032053..2032820 (+) Length   255 a.a.
NCBI ID   WP_218653844.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2027053..2037820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS10265 (AB1395_10265) - 2027071..2029665 (+) 2595 WP_218653841.1 YfhO family protein -
  AB1395_RS10280 (AB1395_10280) rlmH 2030071..2030550 (-) 480 WP_218653842.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AB1395_RS10285 (AB1395_10285) htrA 2030851..2031999 (+) 1149 WP_218653843.1 S1C family serine protease Regulator
  AB1395_RS10290 (AB1395_10290) spo0J 2032053..2032820 (+) 768 WP_218653844.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29327.59 Da        Isoelectric Point: 9.1192

>NTDB_id=1022615 AB1395_RS10290 WP_218653844.1 2032053..2032820(+) (spo0J) [Streptococcus pluranimalium strain SS-15]
MEDILKDIQISYITTNPNQPRHHFNEEEIKELAESIANNGLIQPIIVRPSDIIGYELIAGERRLRAHQYLGKKSIKAVIT
DKSYQESMKQALIENLQRADLNPIEEAKAYQNILDKLELTHQELAISVGKSRPYISNQLRLLQLSKSWQNAIRKGGVMPG
HARLILNLSPKEQDIWLNDIISQQLSVHQLEQKLKQERHSPSSKEKVIFQDHLEKELQKSLGLEVSISGFQQKKGQLSIS
FANEEEFNRIINKLK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1022615 AB1395_RS10290 WP_218653844.1 2032053..2032820(+) (spo0J) [Streptococcus pluranimalium strain SS-15]
ATGGAAGATATTTTAAAAGACATACAAATCAGTTATATTACAACAAATCCTAACCAACCTCGGCACCATTTCAATGAAGA
AGAGATTAAAGAACTTGCTGAATCAATAGCTAATAATGGACTGATCCAACCTATTATCGTTAGACCTTCTGATATTATTG
GATACGAACTAATCGCTGGAGAAAGGCGTTTAAGAGCGCATCAATATCTTGGCAAAAAATCTATTAAAGCTGTTATTACC
GATAAAAGTTATCAAGAAAGTATGAAGCAAGCTCTTATCGAAAATCTTCAAAGAGCTGACTTGAATCCCATTGAAGAAGC
CAAGGCTTATCAAAATATACTTGATAAATTAGAGCTTACCCACCAAGAATTAGCTATTAGTGTCGGAAAATCTCGTCCCT
ATATTTCTAATCAATTGCGCTTACTCCAACTTTCTAAATCTTGGCAAAATGCTATTCGAAAAGGGGGGGTTATGCCAGGC
CATGCACGACTGATTCTAAACCTCTCACCAAAAGAGCAAGACATCTGGCTAAATGATATTATTAGTCAACAATTAAGTGT
ACATCAATTAGAACAGAAATTAAAACAAGAGCGTCATTCGCCTTCTTCCAAAGAAAAAGTCATTTTTCAAGATCATCTCG
AAAAAGAACTGCAAAAATCGCTTGGTTTAGAAGTTAGCATTTCAGGATTTCAGCAAAAAAAAGGACAACTATCGATTAGC
TTCGCAAATGAAGAAGAATTCAACAGAATTATCAACAAGCTAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.373

100

0.514


Multiple sequence alignment