Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | QUE24_RS09745 | Genome accession | NZ_AP027741 |
| Coordinates | 1894157..1895299 (+) | Length | 380 a.a. |
| NCBI ID | WP_286303642.1 | Uniprot ID | - |
| Organism | Methylophaga marina strain NBRC 102421 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1889157..1900299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE24_RS09720 (GCM10025856_19430) | - | 1889672..1890820 (-) | 1149 | WP_286303637.1 | homoserine O-acetyltransferase | - |
| QUE24_RS09725 (GCM10025856_19440) | - | 1890884..1891453 (-) | 570 | WP_286303638.1 | YggT family protein | - |
| QUE24_RS09730 (GCM10025856_19450) | proC | 1891446..1892279 (-) | 834 | WP_286303639.1 | pyrroline-5-carboxylate reductase | - |
| QUE24_RS09735 (GCM10025856_19460) | - | 1892328..1893017 (-) | 690 | WP_286303640.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| QUE24_RS09740 (GCM10025856_19470) | pilT | 1893108..1894145 (+) | 1038 | WP_286303641.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QUE24_RS09745 (GCM10025856_19480) | pilU | 1894157..1895299 (+) | 1143 | WP_286303642.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QUE24_RS09750 (GCM10025856_19490) | - | 1895460..1896293 (+) | 834 | WP_286303644.1 | OmpA family protein | - |
| QUE24_RS09755 (GCM10025856_19500) | - | 1896881..1898653 (-) | 1773 | WP_286306105.1 | methanol/ethanol family PQQ-dependent dehydrogenase | - |
| QUE24_RS09760 | - | 1898915..1899646 (-) | 732 | WP_286303645.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| QUE24_RS09765 (GCM10025856_19510) | - | 1899636..1900076 (-) | 441 | WP_286303646.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 42257.49 Da Isoelectric Point: 5.9185
>NTDB_id=102230 QUE24_RS09745 WP_286303642.1 1894157..1895299(+) (pilU) [Methylophaga marina strain NBRC 102421]
MEIVTILKAAVKHDASDVFITAGRPVTLKVNGRMATLSQDALQDDEARDLVLSTMSDSQKKTFEREKECNYALETKGAGR
FRISALYQRNKIAMVMRRIKDEIPTIEDIHVPQVIKELSMTKRGLVIFVGATGSGKSTTLAAMIGYRNQNSTGHILTIED
PIEFDHKHAGCVVTQREVGIDTDSYEIALRNSLRQAPDVIMIGEIRTRETMDYGVAFAETGHLCLSTLHANNANQAMDRI
INFFPEERHQQLFLDLSLNLKAVIAQRLIPKKDGSGRAVAVEVLLNTPLIADLIEKGKVYEIKEVMKRSKELGMQTFDQA
VYDLYKAGEISYEEALRNADSANEVRLMIKLGMESGELAKDSAVSSLSLQAEPEDVIGRI
MEIVTILKAAVKHDASDVFITAGRPVTLKVNGRMATLSQDALQDDEARDLVLSTMSDSQKKTFEREKECNYALETKGAGR
FRISALYQRNKIAMVMRRIKDEIPTIEDIHVPQVIKELSMTKRGLVIFVGATGSGKSTTLAAMIGYRNQNSTGHILTIED
PIEFDHKHAGCVVTQREVGIDTDSYEIALRNSLRQAPDVIMIGEIRTRETMDYGVAFAETGHLCLSTLHANNANQAMDRI
INFFPEERHQQLFLDLSLNLKAVIAQRLIPKKDGSGRAVAVEVLLNTPLIADLIEKGKVYEIKEVMKRSKELGMQTFDQA
VYDLYKAGEISYEEALRNADSANEVRLMIKLGMESGELAKDSAVSSLSLQAEPEDVIGRI
Nucleotide
Download Length: 1143 bp
>NTDB_id=102230 QUE24_RS09745 WP_286303642.1 1894157..1895299(+) (pilU) [Methylophaga marina strain NBRC 102421]
ATGGAAATTGTCACAATTTTAAAAGCCGCTGTGAAACATGATGCTTCAGATGTGTTCATCACCGCTGGTCGGCCCGTCAC
CTTAAAGGTCAATGGACGTATGGCGACACTCTCACAAGATGCACTGCAGGATGATGAGGCCAGAGATTTAGTATTAAGCA
CGATGTCTGATTCTCAGAAAAAAACATTTGAGCGTGAAAAAGAGTGTAACTACGCACTGGAGACTAAGGGCGCAGGTCGT
TTTCGTATTAGTGCTCTTTATCAACGCAATAAAATTGCCATGGTGATGCGTCGAATTAAAGACGAGATTCCTACTATTGA
AGACATCCATGTGCCTCAAGTCATCAAAGAATTATCGATGACAAAACGTGGTTTAGTCATTTTTGTCGGTGCAACAGGCA
GTGGTAAGTCAACGACATTGGCTGCCATGATCGGTTACCGTAATCAGAATAGTACGGGTCACATTTTGACGATTGAAGAT
CCTATTGAGTTTGACCATAAACACGCTGGCTGTGTTGTTACACAACGAGAAGTTGGAATAGACACTGACTCGTATGAAAT
CGCGCTTCGTAACTCTTTGCGGCAGGCGCCGGATGTGATCATGATTGGTGAGATACGTACCCGTGAGACGATGGATTACG
GTGTCGCATTTGCCGAAACCGGTCATCTTTGTTTATCCACCTTACATGCAAATAACGCGAACCAGGCTATGGACAGGATT
ATCAACTTTTTTCCTGAAGAGCGTCATCAACAGTTATTTTTAGATCTTTCCTTAAATCTGAAAGCCGTTATCGCTCAGCG
ACTAATCCCTAAAAAAGATGGCTCGGGCAGGGCTGTTGCGGTTGAGGTGCTTCTGAATACGCCGCTGATTGCTGATTTGA
TCGAGAAGGGCAAGGTTTATGAAATTAAAGAAGTGATGAAACGCTCTAAAGAGCTGGGTATGCAGACATTTGATCAGGCC
GTCTATGACTTGTACAAAGCCGGTGAAATCAGCTACGAGGAAGCCTTACGTAACGCTGATTCAGCTAATGAAGTACGGCT
AATGATTAAATTGGGTATGGAGTCGGGGGAACTGGCTAAAGACAGTGCTGTTTCCAGTTTATCCTTACAAGCTGAACCTG
AGGATGTAATAGGGCGTATATAG
ATGGAAATTGTCACAATTTTAAAAGCCGCTGTGAAACATGATGCTTCAGATGTGTTCATCACCGCTGGTCGGCCCGTCAC
CTTAAAGGTCAATGGACGTATGGCGACACTCTCACAAGATGCACTGCAGGATGATGAGGCCAGAGATTTAGTATTAAGCA
CGATGTCTGATTCTCAGAAAAAAACATTTGAGCGTGAAAAAGAGTGTAACTACGCACTGGAGACTAAGGGCGCAGGTCGT
TTTCGTATTAGTGCTCTTTATCAACGCAATAAAATTGCCATGGTGATGCGTCGAATTAAAGACGAGATTCCTACTATTGA
AGACATCCATGTGCCTCAAGTCATCAAAGAATTATCGATGACAAAACGTGGTTTAGTCATTTTTGTCGGTGCAACAGGCA
GTGGTAAGTCAACGACATTGGCTGCCATGATCGGTTACCGTAATCAGAATAGTACGGGTCACATTTTGACGATTGAAGAT
CCTATTGAGTTTGACCATAAACACGCTGGCTGTGTTGTTACACAACGAGAAGTTGGAATAGACACTGACTCGTATGAAAT
CGCGCTTCGTAACTCTTTGCGGCAGGCGCCGGATGTGATCATGATTGGTGAGATACGTACCCGTGAGACGATGGATTACG
GTGTCGCATTTGCCGAAACCGGTCATCTTTGTTTATCCACCTTACATGCAAATAACGCGAACCAGGCTATGGACAGGATT
ATCAACTTTTTTCCTGAAGAGCGTCATCAACAGTTATTTTTAGATCTTTCCTTAAATCTGAAAGCCGTTATCGCTCAGCG
ACTAATCCCTAAAAAAGATGGCTCGGGCAGGGCTGTTGCGGTTGAGGTGCTTCTGAATACGCCGCTGATTGCTGATTTGA
TCGAGAAGGGCAAGGTTTATGAAATTAAAGAAGTGATGAAACGCTCTAAAGAGCTGGGTATGCAGACATTTGATCAGGCC
GTCTATGACTTGTACAAAGCCGGTGAAATCAGCTACGAGGAAGCCTTACGTAACGCTGATTCAGCTAATGAAGTACGGCT
AATGATTAAATTGGGTATGGAGTCGGGGGAACTGGCTAAAGACAGTGCTGTTTCCAGTTTATCCTTACAAGCTGAACCTG
AGGATGTAATAGGGCGTATATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
60.533 |
98.684 |
0.597 |
| pilU | Acinetobacter baylyi ADP1 |
58.939 |
94.211 |
0.555 |
| pilU | Vibrio cholerae strain A1552 |
55.429 |
92.105 |
0.511 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.888 |
89.211 |
0.374 |
| pilT | Pseudomonas aeruginosa PAK |
40.708 |
89.211 |
0.363 |