Detailed information NTG1021730

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: AB1723_RS10665
• Genome accession: NZ_CP160633
• Coordinates: 2292121..2293848 (-)
• Length: 575 a.a.
• NCBI ID: WP_367380152.1
• Uniprot ID: -
• Organism: Stenotrophomonas cyclobalanopsidis strain Ed1
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2287121..2298848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1723_RS10655 (AB1723_10650)	-	2287476..2289089 (+)	1614	WP_367380150.1	PAS domain-containing sensor histidine kinase	-
AB1723_RS10660 (AB1723_10655)	pilR	2289145..2290518 (+)	1374	WP_367380151.1	sigma-54-dependent transcriptional regulator	Regulator
AB1723_RS10665 (AB1723_10660)	pilB	2292121..2293848 (-)	1728	WP_367380152.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB1723_RS10670 (AB1723_10665)	-	2293863..2296916 (-)	3054	WP_367380153.1	fused MFS/spermidine synthase	-
AB1723_RS10675 (AB1723_10670)	-	2297041..2297466 (-)	426	WP_367380154.1	pilin	-
AB1723_RS10680 (AB1723_10675)	pilE	2297596..2298024 (-)	429	WP_367380155.1	pilin	Machinery gene

Sequence

Protein

• Length: 575 a.a.
• Molecular weight: 62327.41 Da
• Isoelectric Point: 6.2051

>NTDB_id=1021730 AB1723_RS10665 WP_367380152.1 2292121..2293848(-) (pilB) [Stenotrophomonas cyclobalanopsidis strain Ed1]
MNAVTTANLVGITGLARRLVQDGALDEVAARDAMAKAAAAKQPLPTWFAQNKLVSSAQLAAANSVEFGMPLFDVSTFDAS
LNAMSLVSEELLRKHNVLPLFKRGGRLFVGTSNPTHSLDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTMGDALGGD
DEGMANLDVSGGDEDMSGSDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLFL
DAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCSNCKRPANLPAHA
LLAEGFTQEQLDAGIQLYEAVGCDECTEGYKGRTGIYQVMPMTDEISTIILAGGNALQIAEAAQAIKVNDLRQSALKKAA
AGVTSLAEINRVTKD

Nucleotide

• Length: 1728 bp

>NTDB_id=1021730 AB1723_RS10665 WP_367380152.1 2292121..2293848(-) (pilB) [Stenotrophomonas cyclobalanopsidis strain Ed1]
ATGAACGCTGTAACCACCGCCAATCTCGTCGGCATCACCGGCCTGGCGCGCCGCCTGGTCCAAGACGGCGCGTTGGATGA
AGTCGCCGCCCGAGACGCGATGGCCAAGGCCGCGGCCGCCAAGCAGCCGCTGCCGACCTGGTTCGCCCAGAACAAGCTGG
TCAGCTCTGCTCAGCTGGCAGCCGCCAACTCGGTCGAGTTCGGCATGCCGCTGTTCGATGTGTCCACGTTCGACGCCAGC
CTGAACGCCATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAATGTGCTTCCGCTGTTCAAACGCGGCGGCCGGTT
GTTCGTCGGCACCAGCAACCCGACCCATTCGCTGGATGAGATCAAGTTCCACACCAACCTGGTGGTGGAGCCGATCCTGG
TTGACGAAGACCAGATCCGCCGCACCCTGGAGCAGTGGCACGCCAGCCACGACACCATGGGCGACGCGCTCGGCGGTGAC
GACGAGGGGATGGCCAACCTCGACGTCTCCGGCGGCGACGAGGACATGTCCGGCAGCGACAGCGGCATCGACGCCAAGGG
CGACGACACCCCGGTGGTCAAGTTCGTGAACAAGGTGCTGGTCGACGCGATCCGCAAGGGCGCTTCGGACATCCATTTCG
AGCCCTACGAAGATGATTACCGCGTGCGCCTGCGCATCGACGGCCTTCTGAAGATGGTCGCGCGCGCGCCGGTCAAGTTG
AACCAGCGTATCGCCGCGCGCCTGAAGGTGATGGCGCAGCTGGATATCGCTGAAAAGCGCGTGCCGCAGGACGGACGCAT
CAAGCTGAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACCTTGCCGACGCTGTTCGGCGAGAAGGTGGTGC
TGCGTATCCTGGATGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGTTACGAGCCGGACCAGCAGAAGCTGTTCCTC
GATGCTATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGTAAGACGGTGTCGCTGTACACCGC
GCTGGGCATCCTCAACGACGAAACCCGCAACATCTCCACCGCGGAAGACCCGGTGGAAATCCGTCTGCCCGGCGTCAACC
AGGTGCAGCAGAACAACAAGCGCGGCATGACCTTTGCGGCCGCGCTGCGCTCGTTCCTGCGACAGGATCCGGACATCATC
ATGGTCGGCGAAATCCGCGACCTGGAAACGGCCGAGATCGCGATCAAGGCGGCGCAGACCGGTCACATGGTGCTGTCCAC
GCTGCATACCAACGACGCGCCACAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCACCAGCTCGG
TGACCTTGGTGATTGCCCAGCGCCTGGCGCGACGCCTGTGCAGCAACTGCAAGCGGCCGGCCAATCTGCCGGCCCATGCG
CTGCTGGCCGAGGGCTTCACGCAGGAGCAGCTCGATGCCGGCATCCAGCTGTATGAGGCCGTGGGCTGCGACGAGTGCAC
CGAGGGTTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCTCGACCATCATCCTGGCCGGTG
GCAATGCGCTGCAGATTGCCGAGGCGGCGCAGGCGATCAAGGTGAATGACCTGCGTCAGTCGGCGCTGAAGAAGGCCGCG
GCGGGCGTGACCAGCCTGGCCGAGATCAACCGCGTTACCAAGGATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (198-465)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (49-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baylyi ADP1	56.747	100	0.57
pilB	Acinetobacter baumannii D1279779	56.261	98.609	0.555
pilB	Legionella pneumophila strain ERS1305867	51.761	98.783	0.511
pilF	Neisseria gonorrhoeae MS11	49.03	98.609	0.483
pilB	Vibrio cholerae strain A1552	48.601	99.478	0.483
pilB	Vibrio parahaemolyticus RIMD 2210633	46.235	99.304	0.459
pilB	Vibrio campbellii strain DS40M4	45.105	99.478	0.449
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.156	96.174	0.367