Detailed information NTG1021729

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB1723_RS10660
• Genome accession: NZ_CP160633
• Coordinates: 2289145..2290518 (+)
• Length: 457 a.a.
• NCBI ID: WP_367380151.1
• Uniprot ID: -
• Organism: Stenotrophomonas cyclobalanopsidis strain Ed1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2284145..2295518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1723_RS10645 (AB1723_10640)	sucD	2284973..2285848 (-)	876	WP_116863571.1	succinate--CoA ligase subunit alpha	-
AB1723_RS10650 (AB1723_10645)	sucC	2285870..2287039 (-)	1170	WP_079222939.1	ADP-forming succinate--CoA ligase subunit beta	-
AB1723_RS10655 (AB1723_10650)	-	2287476..2289089 (+)	1614	WP_367380150.1	PAS domain-containing sensor histidine kinase	-
AB1723_RS10660 (AB1723_10655)	pilR	2289145..2290518 (+)	1374	WP_367380151.1	sigma-54-dependent transcriptional regulator	Regulator
AB1723_RS10665 (AB1723_10660)	pilB	2292121..2293848 (-)	1728	WP_367380152.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49669.96 Da
• Isoelectric Point: 6.5118

>NTDB_id=1021729 AB1723_RS10660 WP_367380151.1 2289145..2290518(+) (pilR) [Stenotrophomonas cyclobalanopsidis strain Ed1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAHHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNSSERPVPAAASEQAARLLGDSPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARASGPFIPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRALGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPD
LAGSILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTAGGPAVPEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=1021729 AB1723_RS10660 WP_367380151.1 2289145..2290518(+) (pilR) [Stenotrophomonas cyclobalanopsidis strain Ed1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTTGGCCGCAT
GGGCCTTCGCATCAGCACCGCCGCCAACCTCGCCGAGGCCCGCGAACTGCTGGCCAGCAACCCGTATGACCTGTGCATCA
CCGACATGCGGTTGCCGGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCACCATTACCCGCGTACGCCGGTGGCG
ATGATTACCGCCTTCGGCAGCATGGACCTGGCCGTGGAGGCGCTGAAGGCCGGTGCCTTCGACTTTGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCCCTGGAACTCAACAGCAGCGAGCGCCCGGTGCCAGCGGCCGCCA
GCGAACAGGCCGCCCGCCTGCTCGGGGATTCGCCCGCCATGGATGTGCTGCGGGCCACCATCGGCAAGGTCGCCCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAGCTGGTCGCACGCACCATTCACGCGCAGGGCGCACG
CGCTTCGGGCCCCTTCATTCCGGTTAACTGCGGCGCCATCCCGACCGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGTGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCGCACTGGGCGCGGC
CAACGAGGAACCGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGACGCTTCC
GTCACGACCTGTACTACCGCATCAACGTGATTGAACTGCGGGTGCCGCCGCTGCGCGAACGCCGCCAGGACCTGCCGGAC
CTCGCCGGTTCGATCCTTGCCCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTACTGGCGCCCTCGGCACTGGACGC
GCTGGCCCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTTGAGCGCGCCCTGGCCCTGGCCGAGGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCACGCCCCGCGCACCGCCGGCGGCCCTGCCGTGCCCGAAGCCGTG
GTCGACCTGCACCCCGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCGATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCACAGCTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.472	99.125	0.619
pilR	Acinetobacter baumannii strain A118	47.619	100	0.481
luxO	Vibrio cholerae strain A1552	36.913	97.812	0.361